Alternatives and similar repositories for dbsnp

Users that are interested in dbsnp are comparing it to the libraries listed below

• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆130Updated this week
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆268Updated last year
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆121Updated this week
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆144Updated 2 weeks ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆215Updated 11 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆222Updated this week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆100Updated last week
• igvteam / igv-webapp
  IGV Web App
  ☆121Updated this week
• luntergroup / octopus
  Bayesian haplotype-based mutation calling
  ☆311Updated 2 months ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆145Updated last week
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆73Updated 3 months ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆148Updated 2 weeks ago
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆145Updated 2 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆187Updated this week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆84Updated 6 years ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆86Updated 3 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆150Updated 3 months ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆252Updated 2 months ago
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆109Updated 3 years ago
• KalinNonchev / gnomAD_DB
  This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …
  ☆45Updated last year
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆109Updated 6 years ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆203Updated 4 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆139Updated last year
• VanLoo-lab / ascat
  ASCAT R package
  ☆181Updated 2 months ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆125Updated 2 years ago
• griffithlab / regtools
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
  ☆129Updated 8 months ago
• broadinstitute / warp
  WDL Analysis Research Pipelines
  ☆212Updated this week
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆137Updated 3 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆84Updated 3 months ago