openvax / tcga-immune-deconvolutionLinks
Immune deconvolution of publicly available TCGA expression data
☆11Updated 6 years ago
Alternatives and similar repositories for tcga-immune-deconvolution
Users that are interested in tcga-immune-deconvolution are comparing it to the libraries listed below
Sorting:
- Code to run OncoSig Analyses☆18Updated 4 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated last year
- Important papers relating to the biology of cell free DNA☆19Updated 6 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆38Updated 7 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Updated 4 months ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Updated 5 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 2 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆14Updated 10 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 5 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 7 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆44Updated 7 years ago
- sake☆27Updated 2 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Updated 5 years ago
- Discovery of biological sequence motifs in R☆27Updated 6 years ago
- ☆14Updated 5 years ago