openvax / tcga-immune-deconvolution

Related projects ⓘ

Alternatives and complementary repositories for tcga-immune-deconvolution

• greenelab / tad_pathways_pipeline
  Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
  ☆11Updated 4 years ago
• christacaggiano / cell-free-dna-reading-list
  Important papers relating to the biology of cell free DNA
  ☆18Updated 6 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• pinellolab / haystack_bio
  Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆46Updated 2 years ago
• EBISPOT / GWAS_Catalog-workshop
  Training material for the GWAS Catalog REST API workshop
  ☆12Updated last year
• fabriziocosta / GraphEmbed
  Compute a 2D embedding of a data matrix given supervised class information.
  ☆12Updated 4 years ago
• wenjiegroup / BiRen
  ☆12Updated 5 years ago
• seqcode / miniMDS
  ☆29Updated 4 months ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 4 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆46Updated 5 years ago
• Cobanoglu-Lab / EPEE
  Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…
  ☆16Updated 5 years ago
• NCBI-Hackathons / rnaseqview
  RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon
  ☆36Updated 7 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 5 years ago
• Wittelab / orchid
  A novel management, annotation, and machine learning framework for analyzing cancer mutations
  ☆31Updated 4 months ago
• cole-trapnell-lab / cicero
  ☆11Updated 9 months ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 7 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 6 months ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆34Updated 3 years ago
• cognoma / cancer-data
  TCGA data acquisition and processing for Project Cognoma
  ☆20Updated 6 years ago
• akoch8 / mexpress
  MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.
  ☆13Updated 4 years ago
• kieranrcampbell / clonealign
  Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
  ☆32Updated 3 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆50Updated 2 years ago
• greenelab / RNAseq_titration_results
  Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
  ☆34Updated last year
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 8 years ago
• naikai / sake
  sake
  ☆27Updated last year
• raphael-group / wext
  A Weighted Exact Test for Mutually Exclusive Mutations in Cancer
  ☆21Updated 6 years ago
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 6 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆34Updated last year
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆35Updated 3 years ago
• martinjzhang / single_cell_eb
  Empirical Bayes methods for single cell data
  ☆15Updated 4 years ago