openvax / tcga-immune-deconvolutionLinks
Immune deconvolution of publicly available TCGA expression data
☆11Updated 6 years ago
Alternatives and similar repositories for tcga-immune-deconvolution
Users that are interested in tcga-immune-deconvolution are comparing it to the libraries listed below
Sorting:
- Important papers relating to the biology of cell free DNA☆19Updated 6 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Updated 5 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 7 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆11Updated 7 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Updated 5 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- This repository contains the source code for the tappAS application. See README for details.☆16Updated 2 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 2 years ago
- ☆14Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Updated 6 years ago
- Published at Bioinformatics☆12Updated 11 months ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Updated 9 years ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆12Updated 2 years ago
- A light weight shiny based web app to access TCGA data☆14Updated 10 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆16Updated 3 weeks ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆34Updated 5 years ago