Bioconductor / bioc_dockerLinks
[DEPRECATED] Docker containers for Bioconductor
☆49Updated 2 years ago
Alternatives and similar repositories for bioc_docker
Users that are interested in bioc_docker are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Bioconductor package for management of multi-assay data☆73Updated 2 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 8 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆88Updated 5 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated this week
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆38Updated 3 months ago
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- Modular & interactive analysis components for bioinformatics☆18Updated last month
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆36Updated 4 years ago
- R interface to morpheus.js heatmap widget☆40Updated 5 years ago
- Glimma R package☆50Updated last year
- Bioconductor facilities for parallel evaluation☆69Updated 3 months ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- RStudio Server in a Singularity container☆56Updated last year
- DESeq2 or edgeR☆22Updated 9 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 5 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 3 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 7 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated last year
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago