Alternatives and similar repositories for diversitree

Users that are interested in diversitree are comparing it to the libraries listed below

• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last week
• lamho86 / phylolm
  ☆37Updated 9 months ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 5 years ago
• devillemereuil / QGglmm
  Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…
  ☆16Updated 7 months ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated last week
• pbastide / PhylogeneticEM
  Implementation of the EM algorithm for the detection of shifts in a phylogeny.
  ☆18Updated 6 months ago
• thijsjanzen / treestats
  ☆19Updated 2 months ago
• eriqande / sisg_mcmc_course
  Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics
  ☆30Updated 4 years ago
• bomeara / ComparativeMethodsInR
  A book for teaching people how to do comparative methods in R
  ☆22Updated 2 years ago
• ericgoolsby / Rphylopars
  Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
  ☆32Updated 2 years ago
• fawda123 / ggord
  a take on ordination plots using ggplot2
  ☆65Updated last year
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated last week
• KlausVigo / tanggle
  phylogenetic networks using ggplot2 and ggtree
  ☆11Updated last month
• jarioksa / ordination101
  Ordination lectures for Ecological Methods in Oulu
  ☆19Updated last year
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆23Updated 2 years ago
• daijiang / hillR
  An R pakage to calculate diversity through Hill Numbers
  ☆34Updated last year
• tpetzoldt / growthrates
  R Package growthrates
  ☆27Updated this week
• kpmainali / CooccurrenceAffinity
  Computes affinity between two entities based on their co-occurrence
  ☆27Updated 2 months ago
• sdwfrost / mevr-course-2016
  Molecular Epidemiology of Viruses in R
  ☆19Updated 9 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• hmorlon / PANDA
  Phylogenetic ANalyses of DiversificAtion
  ☆24Updated 7 months ago
• ropensci / phylogram
  Dendrograms for Evolutionary Analysis
  ☆11Updated 5 years ago
• ropensci / taxonomy
  taxonomy R packages
  ☆44Updated last year
• ropensci / rotl
  Interface to Open Tree of Life API
  ☆44Updated 2 years ago
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆28Updated 9 months ago
• revbayes / revbayes_tutorial
  Compilation of tutorials for RevBayes
  ☆22Updated 7 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last week
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• ropensci / taxa
  taxonomic classes for R
  ☆49Updated last month
• TGuillerme / mulTree
  Performs MCMCglmm on multiple phylogenetic trees
  ☆12Updated 4 months ago