R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of these two data types.
☆22Jul 22, 2026Updated this week
Alternatives and similar repositories for paleotree
Users that are interested in paleotree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A directory of scripts that utilize the Paleobiology Database☆16Sep 4, 2019Updated 6 years ago
- palaeoverse: an R package developed by palaeobiologists, for palaeobiologists☆29Updated this week
- The PBDB Data Service, API and table/system maintenance scripts☆12Updated this week
- An R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals☆107Jul 14, 2026Updated last week
- phylogenetic comparative method☆11Jan 9, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated last month
- Measuring disparity with R☆29Jun 16, 2026Updated last month
- DPPDIV☆12Apr 10, 2020Updated 6 years ago
- ☆10Dec 8, 2021Updated 4 years ago
- Performs MCMCglmm on multiple phylogenetic trees☆11Apr 17, 2025Updated last year
- Kernel Logistic Regression on Focal Mean Embeddings☆16Dec 30, 2025Updated 6 months ago
- Computer-Assisted Shape Classification of Archaeological Pottery Fragments☆13Feb 9, 2021Updated 5 years ago
- R package for Bayesian and Frequentist Aoristic inference☆12Sep 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.☆93Updated this week
- Earth Sciences and Paleobiology Interest Group☆14Dec 4, 2025Updated 7 months ago
- Clade age estimation using a Bayesian Brownian bridge model☆15Sep 3, 2025Updated 10 months ago
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- CAPTAIN is a Python program to optimize conservation planning based on biodiversity data and simulations using reinforcement learning☆56Dec 13, 2023Updated 2 years ago
- R interface to the Paleobiology Database☆47Sep 2, 2025Updated 10 months ago
- An R interface for PHYLIP.☆15May 7, 2020Updated 6 years ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆33Updated this week
- Tools for data handling and analysis in macroecology☆30May 12, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Create, modify and analyse phylogenetic trees in R☆24Jul 7, 2026Updated 2 weeks ago
- An R package to derive outline shapes from (multiple) artefacts on JPEG images.☆16Nov 14, 2021Updated 4 years ago
- Fossil calibrations database☆16Sep 18, 2018Updated 7 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation,…☆87May 27, 2025Updated last year
- Stratigraphic diagrams in R☆21Mar 22, 2026Updated 4 months ago
- Radiocarbon calibration command line tool and Haskell module☆11Jun 11, 2026Updated last month
- Create ternary plots in R☆37Jun 5, 2026Updated last month
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A 3-day R course given in University College Cork that encompasses various elements off reproducible research facilitated through RStudio…☆11Jun 17, 2020Updated 6 years ago
- Reboot of Advanced Civilization Board Game Map☆14Jun 13, 2017Updated 9 years ago
- ☆24Feb 11, 2026Updated 5 months ago
- Display utilities for phylogenetic trees and networks☆22Updated this week
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated last month
- mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data☆19Jul 13, 2026Updated last week
- Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data explorat…☆23Aug 31, 2023Updated 2 years ago