adrian-lison / EpiSewer
An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
☆15Updated this week
Related projects ⓘ
Alternatives and complementary repositories for EpiSewer
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated last week
- ☆10Updated last month
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆17Updated last week
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆17Updated last month
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 6 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- ☆28Updated last month
- Create Contact Matrices from Population Data☆18Updated 2 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- ☆36Updated 2 weeks ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- Examples on INLA within MCMC☆11Updated 7 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 2 years ago
- ☆10Updated this week
- Data and statistical models for biomarker shedding.☆11Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 3 weeks ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Short course on parametric survival analysis☆15Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆14Updated 5 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 3 years ago
- Fit stochastic differential equation models with time-varying parameters☆15Updated 5 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆57Updated last week
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated last year
- Tool-set to support Bayesian evidence synthesis in R☆20Updated 10 months ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆11Updated 3 weeks ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago