myhelix / helix-covid19dbLinks
Helix® COVID-19 Surveillance
☆16Updated 4 months ago
Alternatives and similar repositories for helix-covid19db
Users that are interested in helix-covid19db are comparing it to the libraries listed below
Sorting:
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 weeks ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- R package for estimating excess deaths from daily count data☆20Updated 4 months ago
- R package for deriving social mixing matrices from survey data.☆40Updated this week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆16Updated 3 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆27Updated 4 years ago
- ☆17Updated 4 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆30Updated 9 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- CRAN Task View: Epidemiology☆23Updated this week
- outbreaks: an R package compiling disease outbreak data☆52Updated 2 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆23Updated 5 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 11 months ago
- Simulation-based Inference for Epidemiological Dynamics☆25Updated 3 months ago
- R package to implement and visualize several epidemiological forecasting methods.☆20Updated last year
- ☆42Updated this week
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated 2 weeks ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 10 months ago
- FluSight Forecast Submissions☆19Updated last year
- Create Contact Matrices from Population Data☆20Updated 3 weeks ago