oswaldogressani / EpiLPSView external linksLinks
A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
☆21Sep 1, 2025Updated 5 months ago
Alternatives and similar repositories for EpiLPS
Users that are interested in EpiLPS are comparing it to the libraries listed below
Sorting:
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- ☆14Oct 20, 2023Updated 2 years ago
- ☆10Sep 30, 2025Updated 4 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- ☆32Jan 21, 2026Updated 3 weeks ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Jul 13, 2023Updated 2 years ago
- Estimate epidemiological delay distributions with brms☆15Jan 16, 2026Updated last month
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- Simulate infectious disease transmission with contact tracing☆17Feb 2, 2026Updated 2 weeks ago
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 4 months ago
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Jan 1, 2026Updated last month
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 2 months ago
- Utilities for Scoring and Assessing Predictions☆60Feb 9, 2026Updated last week
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Jul 11, 2019Updated 6 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Feb 9, 2026Updated last week
- R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series☆14Jan 1, 2026Updated last month
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- epidemia package☆49Jun 24, 2022Updated 3 years ago
- An R package for simulating line lists☆10Feb 6, 2026Updated last week
- Epidemiology modelling framework for the Thanzi la Onse project☆33Updated this week
- Create Contact Matrices from Population Data☆20Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆102Updated this week
- Analysing epidemic trends using AutoML approaches.☆19Apr 23, 2021Updated 4 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Oct 13, 2022Updated 3 years ago
- Files for StanCon 2023 tutorial.☆21Jun 19, 2024Updated last year
- ☆20Feb 15, 2023Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- ☆43Aug 19, 2025Updated 5 months ago
- Introduction to simulation of randomized controlled trials in R☆26May 13, 2022Updated 3 years ago
- Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"☆30May 11, 2022Updated 3 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- CRAN Task View: Epidemiology☆23Updated this week
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 3 years ago