cdcepi / WNV-forecast-project-2023
Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge
☆11Updated last year
Alternatives and similar repositories for WNV-forecast-project-2023
Users that are interested in WNV-forecast-project-2023 are comparing it to the libraries listed below
Sorting:
- ☆10Updated 7 months ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆16Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆14Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 11 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Create Contact Matrices from Population Data☆20Updated last week
- Estimate epidemiological delay distributions with brms☆15Updated 2 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- ☆9Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- R package to conduct plausibility analysis of epidemiological signals☆10Updated 7 months ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated 2 weeks ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last week
- R Package for individual based epidemiological models☆30Updated 8 months ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- ☆29Updated last month
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 4 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆11Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 4 months ago
- CRAN Task View: Epidemiology☆22Updated last week