modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
☆17Dec 7, 2023Updated 2 years ago
Alternatives and similar repositories for neuts2efficacy
Users that are interested in neuts2efficacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 8 months ago
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Jan 25, 2022Updated 4 years ago
- An R package for Bayes Linear emulation and history matching.☆19Dec 1, 2025Updated 6 months ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Create Contact Matrices from Population Data☆21Feb 24, 2026Updated 3 months ago
- ☆44Apr 13, 2026Updated 2 months ago
- ☆37Updated this week
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Jun 2, 2022Updated 4 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated 2 weeks ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 5 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Feb 25, 2021Updated 5 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆14Apr 6, 2023Updated 3 years ago
- ☆10Sep 30, 2025Updated 8 months ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- ☆20Apr 9, 2021Updated 5 years ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- Create maps of the time to travel from a user-supplied set of locations☆11Aug 11, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package implementing an idiosyncratic Stan workflow☆15Aug 18, 2022Updated 3 years ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆65Updated this week
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Jul 13, 2023Updated 2 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆24Jun 1, 2026Updated 2 weeks ago
- Short course on parametric survival analysis☆15Apr 13, 2026Updated 2 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 4 years ago
- Grouped dates in R☆21Mar 25, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utilities for Scoring and Assessing Predictions☆61May 30, 2026Updated 2 weeks ago
- ☆19Dec 22, 2025Updated 5 months ago
- ☆10Feb 9, 2026Updated 4 months ago
- Pareto smoothed importance sampling☆18Updated this week
- epidemia package☆50Jun 24, 2022Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago