mhoehle / STA427_SM4IDELinks
Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
☆20Updated 4 years ago
Alternatives and similar repositories for STA427_SM4IDE
Users that are interested in STA427_SM4IDE are comparing it to the libraries listed below
Sorting:
- Infectious disease model library and utilities☆15Updated 3 years ago
- Create Contact Matrices from Population Data☆20Updated 3 weeks ago
- CRAN Task View: Epidemiology☆24Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Updated 2 weeks ago
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology☆10Updated 4 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Estimate epidemiological delay distributions with brms☆15Updated 2 weeks ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 3 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Covid-19 epidemiology - data and analysis☆11Updated 2 years ago
- ☆32Updated last week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated 3 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated 2 years ago
- ☆14Updated 2 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- ☆43Updated 5 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 4 months ago
- Monte-Carlo State Space Models☆19Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 5 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 2 months ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Updated 2 weeks ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆21Updated 3 weeks ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- statistical models to analyze diagnostic tests☆16Updated 5 years ago