mhoehle / STA427_SM4IDELinks
Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
☆20Updated 4 years ago
Alternatives and similar repositories for STA427_SM4IDE
Users that are interested in STA427_SM4IDE are comparing it to the libraries listed below
Sorting:
- Course on nowcasting and forecasting of infectious disease dynamics☆22Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Updated 2 years ago
- Create Contact Matrices from Population Data☆20Updated 2 weeks ago
- CRAN Task View: Epidemiology☆24Updated 3 months ago
- ☆14Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Infectious disease model library and utilities☆15Updated 3 years ago
- ☆43Updated 4 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 3 years ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated last week
- ☆32Updated last month
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated last month
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- statistical models to analyze diagnostic tests☆16Updated 5 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated last week
- Estimate epidemiological delay distributions with brms☆15Updated 3 weeks ago
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology☆10Updated 4 years ago
- Tool-set to support Bayesian evidence synthesis in R☆25Updated 7 months ago
- Analysing epidemic trends using AutoML approaches.☆19Updated 4 years ago
- Monte-Carlo State Space Models☆19Updated last year
- R package for estimating excess deaths from daily count data☆21Updated last month
- R package for deriving social mixing matrices from survey data.☆43Updated 2 weeks ago
- ☆10Updated 3 months ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Updated 10 months ago