ebov / space-time
Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016
☆58Updated 6 years ago
Alternatives and similar repositories for space-time:
Users that are interested in space-time are comparing it to the libraries listed below
- Pathogen evolution, selection and immunity☆45Updated last year
- A textbook for phylogenetic comparative methods.☆43Updated 5 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Ordination lectures for Ecological Methods in Oulu☆18Updated 9 months ago
- An R pakage to calculate diversity through Hill Numbers☆34Updated last year
- Resources for Influenza Research☆23Updated 2 years ago
- SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based…☆29Updated 7 years ago
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- ☆19Updated 3 weeks ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆34Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- Compilation of tutorials for RevBayes☆22Updated 6 years ago
- Species richness with high diversity☆68Updated 3 weeks ago
- An open database of vertebrate-virus interactions☆39Updated this week
- code for Numerical Ecology with R☆35Updated 6 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Updated 7 months ago
- Code to run the shiny functions for the MASAME suite☆28Updated 5 years ago
- babette is an R package to work with BEAST2☆45Updated last week
- Disease outbreak reconstruction from epidemiological and genetic data☆32Updated 7 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- R package to run BEAST2☆11Updated last week
- A book for teaching people how to do comparative methods in R☆20Updated last year
- Plotting Tools for Anyone Working in Deep Time☆97Updated last week
- Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic☆42Updated 2 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- a take on ordination plots using ggplot2☆64Updated 9 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 10 months ago
- An interactive web application for demonstrating and using phyloseq.☆60Updated 5 years ago