Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016
☆61Nov 14, 2018Updated 7 years ago
Alternatives and similar repositories for space-time
Users that are interested in space-time are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- Pathogen evolution, selection and immunity☆45Mar 5, 2024Updated 2 years ago
- R We There Yet?☆32Mar 27, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Tutorial on Bayesian phylogenetic analysis☆52Sep 21, 2017Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 7 months ago
- ☆10Dec 20, 2022Updated 3 years ago
- Phylodynamic inference☆22May 15, 2020Updated 5 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Jul 13, 2021Updated 4 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21Apr 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- ☆10Jan 20, 2023Updated 3 years ago
- ☆68Oct 17, 2023Updated 2 years ago
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 6 months ago
- ☆13Apr 21, 2026Updated last week
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆117Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for building predictive models in epidemiology.☆17Apr 24, 2026Updated last week
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Apr 15, 2026Updated 2 weeks ago
- Code for building and testing variant ranking strategies☆17Apr 13, 2026Updated 2 weeks ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Apr 28, 2023Updated 3 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- ☆19Mar 20, 2026Updated last month
- HyPhy standalone analyses☆53Jan 5, 2026Updated 3 months ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated last month
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Aug 29, 2017Updated 8 years ago
- Presentations for the OpenGeoHub Summer School 2019: https://opengeohub.org/summer_school_2019☆20Feb 3, 2024Updated 2 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 3 months ago
- Black-swan events in animal populations☆12Mar 22, 2017Updated 9 years ago