Phylogenetic model exploration with deep learning
☆12Jun 15, 2026Updated 2 months ago
Alternatives and similar repositories for phyddle
Users that are interested in phyddle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sketch phylogenetic trees and networks☆26Updated this week
- ☆20Jun 15, 2024Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 2 months ago
- Connecting research programs and the outside world☆30Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Feb 11, 2021Updated 5 years ago
- ☆10Feb 27, 2026Updated 6 months ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 9 years ago
- ☆22Jul 5, 2026Updated last month
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated 2 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 4 months ago
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- ☆18Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆10Aug 21, 2025Updated last year
- Scoring multiple sequence alignments with Python☆23Jun 18, 2023Updated 3 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- ☆15Mar 23, 2026Updated 5 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- ☆11Aug 18, 2024Updated 2 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆19Jan 4, 2026Updated 7 months ago
- SARS-CoV-2 genomics☆16Jun 20, 2025Updated last year
- Analyzing combinations of codon substitution histories☆48Updated this week
- ☆15Updated this week
- This codebase accompanies the paper "Evaluating AI-based Scientific Knowledge Synthesis with Epidemiological Systematic Reviews""☆24May 7, 2026Updated 3 months ago
- Simulate biological cells☆22Oct 23, 2025Updated 10 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- ☆15Apr 16, 2026Updated 4 months ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recombination-free trees☆72Jul 24, 2026Updated last month
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆66Mar 15, 2026Updated 5 months ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Apr 16, 2026Updated 4 months ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 3 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 10 months ago