mobiusklein / glypy
Glycan Analysis and Glycoinformatics Library for Python
☆33Updated 2 months ago
Alternatives and similar repositories for glypy:
Users that are interested in glypy are comparing it to the libraries listed below
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆52Updated last week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆84Updated last year
- Package for processing and analyzing glycans and their role in biology.☆62Updated last week
- ☆58Updated 11 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 3 years ago
- A Python interface to proteomics data repositories☆34Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated last week
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆19Updated last year
- Singularity recipe for AlphaFold☆35Updated 5 months ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆84Updated this week
- HUPO-PSI mass spectrometry CV☆30Updated last month
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆125Updated last week
- ☆17Updated last month
- A Python workflow to study protein-protein coevolution and interaction☆21Updated 7 years ago
- Evolutionary conservation estimation of residues or nucleotides☆38Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated 3 weeks ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Updated last month
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Python package for investigating the structural context of PTMs☆28Updated 3 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- Comprehensive Python client for the Uniprot REST API☆47Updated 7 months ago
- Python interface to amino acid properties and IEDB☆56Updated 6 months ago