BojarLab / glycowork
Package for processing and analyzing glycans and their role in biology.
☆64Updated this week
Alternatives and similar repositories for glycowork:
Users that are interested in glycowork are comparing it to the libraries listed below
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆70Updated 2 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆93Updated 3 weeks ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- Evolutionary velocity with protein language models☆90Updated last year
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆19Updated 8 months ago
- Glycan Analysis and Glycoinformatics Library for Python☆34Updated 3 months ago
- ☆46Updated 5 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆59Updated last month
- A software package for computing features of peptides and proteins☆58Updated 10 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 4 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- predict stability change upon mutation☆28Updated 10 months ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 2 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆80Updated last week
- Paratope Prediction using Deep Learning☆59Updated last year
- Interactive Python notebooks for PDBe API training☆52Updated 3 months ago
- Fast and accurate protein structure prediction☆52Updated 3 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆76Updated 9 months ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆56Updated last week
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆79Updated 2 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆100Updated this week
- Multi-task and masked language model-based protein sequence embedding models.☆101Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Protein language model trained on coding DNA☆47Updated 6 months ago
- Neural networks for deep mutational scanning data☆68Updated 5 months ago