Alternatives and similar repositories for ukbrest

Users that are interested in ukbrest are comparing it to the libraries listed below

• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆106Updated 2 years ago
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆40Updated 3 weeks ago
• niekverw / ukbpheno
  ☆31Updated 11 months ago
• arorarshi / survClust
  An outcome weighted supervised clustering algorithm, designed to classify patients according to their molecular as well as time-event or …
  ☆16Updated last year
• lukejoconnor / LCV
  Software implementing the Latent Causal Variable Model
  ☆63Updated 5 years ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆149Updated last month
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆54Updated 2 years ago
• PheWAS / PhecodeX
  ☆16Updated 7 months ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆75Updated 4 years ago
• PheWAS / PheWAS
  The PheWAS R package
  ☆143Updated 5 months ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• MRCIEU / PHESANT-MR-pheWAS-BMI
  ☆13Updated 6 years ago
• FritscheLab / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆29Updated last year
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆27Updated 4 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆60Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆85Updated 3 months ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• Sage-Bionetworks / synapser
  An R package providing programmatic access to Synapse
  ☆37Updated last month
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆14Updated 3 months ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆26Updated 4 years ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated last week
• mararie / lionessR
  Single sample network reconstruction in R
  ☆23Updated 5 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆36Updated 4 years ago
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆14Updated 5 years ago
• limix / struct-lmm
  Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
  ☆14Updated 5 years ago
• rmgpanw / ukbwranglr
  R package for UK Biobank data wrangling.
  ☆21Updated last year
• perslab / depict
  DEPICT code, instructions and an example
  ☆50Updated 3 years ago