hakyimlab / ukbrest
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
☆38Updated 3 years ago
Alternatives and similar repositories for ukbrest:
Users that are interested in ukbrest are comparing it to the libraries listed below
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆33Updated 2 months ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆23Updated last year
- Sample code for ldsc analyses in UKBB☆30Updated last year
- ☆30Updated 3 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆47Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆47Updated last month
- R package for UK Biobank data wrangling.☆18Updated 9 months ago
- PRS pipeline using PRS_CS☆12Updated last month
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆32Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Documentation on new GWAS Summary Statistics Standard☆18Updated 5 months ago
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆47Updated this week
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 3 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆23Updated 2 years ago
- GWAS for survival analysis in large cohorts☆21Updated 6 months ago
- An R package to manipulate and explore UK Biobank data☆98Updated last year
- Code for the in-dev PrediXcan Project☆27Updated 2 years ago
- Software implementing the Latent Causal Variable Model☆63Updated 4 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆14Updated 4 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- ☆23Updated 4 years ago
- LDlinkR☆57Updated 9 months ago
- ☆24Updated last week
- Code for multivariate genome wide association meta analysis☆20Updated 5 years ago
- Genetics ToolboX R package☆31Updated 4 years ago
- ☆20Updated last year
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago