Alternatives and similar repositories for ukbrest

Users that are interested in ukbrest are comparing it to the libraries listed below

• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆105Updated 2 years ago
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆35Updated 7 months ago
• PheWAS / PhecodeX
  ☆15Updated 5 months ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆51Updated 2 years ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆74Updated 4 years ago
• niekverw / ukbpheno
  ☆31Updated 9 months ago
• arorarshi / survClust
  An outcome weighted supervised clustering algorithm, designed to classify patients according to their molecular as well as time-event or …
  ☆16Updated last year
• lukejoconnor / LCV
  Software implementing the Latent Causal Variable Model
  ☆63Updated 5 years ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆147Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆25Updated 4 years ago
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆27Updated 4 years ago
• PheWAS / PheWAS
  The PheWAS R package
  ☆143Updated 3 months ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated last month
• rmgpanw / ukbwranglr
  R package for UK Biobank data wrangling.
  ☆20Updated last year
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆30Updated last year
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆14Updated 4 years ago
• dnanexus-rnd / liftover_plink_beds
  Converting UK Biobank genome-wide genotyping data from one reference build to another
  ☆18Updated last year
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆78Updated last year
• umich-cphds / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆27Updated last year
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆14Updated 4 months ago
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆26Updated 2 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 4 months ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• MRCIEU / PHESANT-MR-pheWAS-BMI
  ☆13Updated 6 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 8 months ago