Alternatives and similar repositories for ukbrest

Users that are interested in ukbrest are comparing it to the libraries listed below

• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆43Updated last week
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆108Updated 2 years ago
• PheWAS / PhecodeX
  ☆23Updated 2 months ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆56Updated 2 years ago
• dnanexus-rnd / liftover_plink_beds
  Converting UK Biobank genome-wide genotyping data from one reference build to another
  ☆22Updated last year
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆155Updated last month
• all-of-us / ukb-cross-analysis-demo-project
  Workbench demo project: cross-analysis of AoU and UKB.
  ☆13Updated 2 years ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆78Updated 5 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆26Updated 4 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆62Updated last week
• PheWAS / PheWAS
  The PheWAS R package
  ☆148Updated last month
• lukejoconnor / LCV
  Software implementing the Latent Causal Variable Model
  ☆64Updated 5 years ago
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆27Updated 4 years ago
• limix / struct-lmm
  Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
  ☆14Updated 5 years ago
• arorarshi / survClust
  An outcome weighted supervised clustering algorithm, designed to classify patients according to their molecular as well as time-event or …
  ☆16Updated last year
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• FritscheLab / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆32Updated 2 years ago
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆15Updated 5 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆38Updated last month
• CBIIT / LDlinkR
  LDlinkR
  ☆62Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆91Updated 2 weeks ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 3 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• rmgpanw / ukbwranglr
  R package for UK Biobank data wrangling.
  ☆21Updated last year
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆28Updated 3 years ago
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆14Updated last month
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆73Updated 3 weeks ago
• lcpilling / ukbrapR
  R package for working in the UK Biobank Research Analysis Platform (RAP)
  ☆69Updated this week
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 3 weeks ago