Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
☆26May 15, 2024Updated last year
Alternatives and similar repositories for Genoppi
Users that are interested in Genoppi are comparing it to the libraries listed below
Sorting:
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 6 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- ☆13Jun 17, 2021Updated 4 years ago
- SV☆14May 3, 2018Updated 7 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- Secure multi-party linear regression at plaintext speed☆16Mar 20, 2022Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆43Jan 20, 2023Updated 3 years ago
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 2 years ago
- Minimal genome browser library created with TnT☆19Nov 22, 2017Updated 8 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- GWAS for survival analysis in large cohorts☆22Jul 24, 2024Updated last year
- A framework for network analysis and display of SNPs☆19Oct 31, 2016Updated 9 years ago
- Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT☆22Dec 5, 2018Updated 7 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Sep 6, 2021Updated 4 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Software implementing the Latent Causal Variable Model☆64Jun 30, 2020Updated 5 years ago
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated 7 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- ☆30Oct 18, 2021Updated 4 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- Morelia is a free, open-source Python API for Pinnacle Technology devices.☆11Feb 13, 2026Updated 2 weeks ago
- ☆32Feb 24, 2026Updated last week
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Feb 10, 2026Updated 3 weeks ago
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- R package for WebGestalt☆38Dec 5, 2025Updated 3 months ago
- ☆88Sep 21, 2025Updated 5 months ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 10 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago