lagelab / Genoppi
Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
☆27Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for Genoppi
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- ☆37Updated 2 years ago
- binned motif enrichment analysis and visualisation☆38Updated 3 weeks ago
- An R interface to the MEME Suite☆46Updated last month
- R package for analysing proteomics data☆48Updated last year
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 5 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Identify and correct invalid gene symbols☆55Updated this week
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- R package to visualize scRNA sequencing data.☆20Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing data☆15Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Toolbox with R scripts☆37Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Reduce + Visualize Gene Ontology☆22Updated 2 weeks ago
- ☆42Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year