Nealelab / cloudtools

Related projects ⓘ

Alternatives and complementary repositories for cloudtools

• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆39Updated 2 weeks ago
• Ensembl / postgap
  Linking GWAS studies to genes through cis-regulatory datasets
  ☆39Updated last year
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆20Updated last year
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• dnanexus-rnd / DeepVariant-GLnexus-WDL
  WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
  ☆10Updated 6 years ago
• broadinstitute / gnomad_qc
  ☆68Updated this week
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆31Updated 4 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆31Updated 8 months ago
• EBISPOT / goci
  GWAS Catalog Ontology and Curation Infrastructure
  ☆26Updated last month
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 2 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 5 years ago
• Genomon-Project / paplot
  paplot creates various dynamic and interactive reports for cancer genome analysis.
  ☆25Updated last year
• Wittelab / orchid
  A novel management, annotation, and machine learning framework for analyzing cancer mutations
  ☆31Updated 4 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• PGDX / cerebro-paper
  ☆23Updated 6 years ago
• UW-GAC / analysis_pipeline
  TOPMed analysis pipeline
  ☆52Updated last year
• Illumina / happyR
  R tools to interact with hap.py output
  ☆15Updated 5 years ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆89Updated 3 weeks ago
• raphael-group / comet
  CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
  ☆19Updated 5 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆41Updated 2 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆46Updated 5 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆39Updated 3 years ago
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated 2 months ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• BD2KGenomics / protect
  ☆28Updated 3 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated last month
• NCI-GDC / gdcdatamodel
  Translation layer between the GDC Data Dictionary and psqlgraph
  ☆28Updated 8 months ago
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆17Updated last year