Nealelab / cloudtools
Scripts for working with Google Cloud Dataproc service
☆37Updated 5 years ago
Alternatives and similar repositories for cloudtools:
Users that are interested in cloudtools are comparing it to the libraries listed below
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated last month
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Python module to read binary Plink files.☆17Updated 9 months ago
- ☆69Updated this week
- Genome-wide imputation pipeline☆31Updated 8 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- SEQSpark documentation☆18Updated 4 years ago
- ☆40Updated 7 years ago
- TOPMed analysis pipeline☆52Updated last year
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated last week
- Hail helper functions for the gnomAD project and Translational Genomics Group☆93Updated last week
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated last week
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Fork of ricopili for development of pipeline for family-based data☆17Updated last year
- GWAS gold standards repository☆32Updated last year
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- ☆57Updated 3 years ago
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- software package for integrative genetic association analysis☆34Updated last year
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- http://bam.iobio.io☆46Updated 10 months ago