Nealelab / cloudtools
Scripts for working with Google Cloud Dataproc service
☆37Updated 5 years ago
Alternatives and similar repositories for cloudtools:
Users that are interested in cloudtools are comparing it to the libraries listed below
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated last month
- Genome-wide imputation pipeline☆31Updated 5 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Exon-exon splice junctions across SRA☆39Updated 3 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- SEQSpark documentation☆18Updated 4 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆29Updated 9 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated 3 months ago
- SevenBridges Python Api bindings☆46Updated 3 months ago
- Fork of ricopili for development of pipeline for family-based data☆17Updated last year
- Python module to read binary Plink files.☆16Updated 7 months ago
- ☆27Updated this week
- ☆69Updated this week
- See the main fork of this repository here >>>☆38Updated last month
- Downloader for ENCODE☆31Updated 4 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆25Updated 5 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆39Updated 2 months ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆60Updated 2 months ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- TOPMed analysis pipeline☆52Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week