Alternatives and similar repositories for cloudtools:

Users that are interested in cloudtools are comparing it to the libraries listed below

• Ensembl / postgap
  Linking GWAS studies to genes through cis-regulatory datasets
  ☆39Updated 2 years ago
• statgenetics / seqspark
  SEQSpark documentation
  ☆18Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• UW-GAC / analysis_pipeline
  TOPMed analysis pipeline
  ☆52Updated last year
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆39Updated 3 years ago
• broadinstitute / gnomad_qc
  ☆69Updated this week
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆17Updated last year
• DataBiosphere / terra-docker
  ☆27Updated last month
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆64Updated last month
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆31Updated 4 years ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 2 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆40Updated last week
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆22Updated last month
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆92Updated this week
• pgxcentre / manhattan_generator
  Manhattan plot Generator
  ☆24Updated 4 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 11 months ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 3 years ago
• EBISPOT / GWAS_Catalog-workshop
  Training material for the GWAS Catalog REST API workshop
  ☆12Updated last year
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆47Updated last year
• UW-GAC / GENESIS
  GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…
  ☆36Updated 2 weeks ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆48Updated 5 years ago
• lemieuxl / pyplink
  Python module to read binary Plink files.
  ☆16Updated 8 months ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆60Updated 5 years ago