Alternatives and similar repositories for ngsdat2:

Users that are interested in ngsdat2 are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 4 months ago
• suimye / cage_tutorial
  Step by step tutorial for CAGE analysis
  ☆9Updated 3 years ago
• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆14Updated 3 months ago
• genome-sci / python_bioinfo_2022
  ☆11Updated 2 years ago
• zhipenglu / CRSSANT
  Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
  ☆12Updated last year
• anderssonrobin / enhancers
  Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
  ☆13Updated 3 months ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• VRam142 / combinatorialHiC
  Scripts + resources for analyzing combinatorial Hi-C data
  ☆29Updated 5 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆82Updated last month
• inutano / pfastq-dump
  parallel-fastq-dump implementation in bash script
  ☆41Updated 5 years ago
• Imamachi-n / NGS-Tutorial
  NGS Tutorial
  ☆15Updated 7 years ago
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆48Updated last year
• gagneurlab / absplice
  ☆38Updated 6 months ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆73Updated 2 years ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆73Updated last week
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• khigashi1987 / scRNAseq_handson
  PythonによるシングルセルRNA-seq解析。
  ☆20Updated 2 years ago
• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆16Updated last week
• BUStools / bustools
  Tools for working with BUS files
  ☆95Updated 5 months ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆91Updated 8 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆56Updated last year
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆32Updated 8 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆61Updated 4 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• lrylaarsdam / amethyst
  An analysis toolkit for single-cell methylation sequencing data
  ☆17Updated 2 weeks ago
• icbi-lab / nextNEOpi
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
  ☆70Updated 3 months ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆64Updated this week
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆94Updated 4 months ago