Alternatives and similar repositories for ngsdat2

Users that are interested in ngsdat2 are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆29Updated 11 months ago
• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆15Updated last week
• genome-sci / python_bioinfo_2022
  ☆14Updated 2 years ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆79Updated this week
• zhipenglu / CRSSANT
  Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
  ☆12Updated last year
• crickbabs / DRB_TT-seq
  Scripts for the analysis of TT-seq and DRB/TT-seq data.
  ☆10Updated 5 years ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆72Updated this week
• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆35Updated 3 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆75Updated 2 years ago
• open2c / cooler-binder
  Cooler demo using a Jupyter notebook Binder
  ☆18Updated 5 years ago
• tatsuhikonaito / DEEP-HLA
  Upload test
  ☆22Updated last year
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 4 months ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆95Updated last year
• TrinityCTAT / Trinity_CTAT
  ☆120Updated 2 years ago
• 10XGenomics / bamtofastq
  Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
  ☆66Updated last week
• lrylaarsdam / amethyst
  A comprehensive toolkit for single-cell methylation sequencing data analysis
  ☆25Updated last week
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆152Updated last year
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆84Updated last year
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆76Updated last year
• epi2me-labs / wf-single-cell
  ☆96Updated last week
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆92Updated last week
• open2c / pairtools
  Extract 3D contacts (.pairs) from sequencing alignments
  ☆116Updated this week
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆74Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆111Updated 11 months ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆15Updated 3 weeks ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆40Updated 3 years ago
• sjroth / ARTDeco
  ☆20Updated last year