Alternatives and similar repositories for ngsdat2

Users that are interested in ngsdat2 are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 7 months ago
• suimye / cage_tutorial
  Step by step tutorial for CAGE analysis
  ☆9Updated 3 years ago
• genome-sci / python_bioinfo_2022
  ☆12Updated 2 years ago
• Kan-E / RNAseqChef
  Web app for automated, systematic, and integrated RNA-seq differential expression analysis
  ☆15Updated 2 months ago
• Imamachi-n / NGS-Tutorial
  NGS Tutorial
  ☆15Updated 8 years ago
• zhipenglu / CRSSANT
  Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
  ☆12Updated last year
• inutano / pfastq-dump
  parallel-fastq-dump implementation in bash script
  ☆41Updated 5 years ago
• pitagora-network / DAT2-cwl
  Common Workflow Language definition files for workflows introduced in DAT2
  ☆11Updated 3 years ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆94Updated 10 months ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• khigashi1987 / scRNAseq_handson
  PythonによるシングルセルRNA-seq解析。
  ☆20Updated 2 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆100Updated last month
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆73Updated 2 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 4 months ago
• gagneurlab / absplice
  ☆39Updated 9 months ago
• dbcls / Togothon
  ☆32Updated last week
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆69Updated last year
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆82Updated last month
• XiaoTaoWang / NeoLoopFinder
  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
  ☆65Updated last year
• mskilab-org / JaBbA
  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
  ☆57Updated 3 months ago
• crickbabs / DRB_TT-seq
  Scripts for the analysis of TT-seq and DRB/TT-seq data.
  ☆10Updated 5 years ago
• tatsuhikonaito / DEEP-HLA
  Upload test
  ☆21Updated last year
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆67Updated 2 weeks ago
• sjroth / ARTDeco
  ☆20Updated last year
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆74Updated last month
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• nloyfer / meth_atlas
  ☆48Updated 3 years ago