Alternatives and similar repositories for RNAseqChef

Users that are interested in RNAseqChef are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 5 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆28Updated last month
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆69Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆24Updated last week
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆43Updated last month
• genome-sci / python_bioinfo_2022
  ☆12Updated 2 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆90Updated last month
• gexijin / idepGolem
  ☆38Updated this week
• gagneurlab / absplice
  ☆38Updated 8 months ago
• asntech / pyjaspar
  pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
  ☆27Updated 2 weeks ago
• gexijin / shinygo
  ☆27Updated 3 weeks ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆60Updated 2 weeks ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 4 months ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆73Updated last week
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆68Updated this week
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 2 months ago
• BioinfoUNIBA / REDItools2
  ☆58Updated 3 years ago
• cancerit / NanoSeq
  Analysis software for Nanorate Sequencing (NanoSeq) experiments
  ☆17Updated 4 months ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆49Updated 7 months ago
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆55Updated 7 months ago
• misshie / ngsdat2
  NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
  ☆41Updated 4 years ago
• Xinglab / espresso
  ☆61Updated 9 months ago
• developerpiru / BEAVR
  BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
  ☆25Updated 3 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆59Updated 5 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆33Updated 2 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆80Updated 5 months ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆43Updated last month