Kan-E / RNAseqChefLinks
Web app for automated, systematic, and integrated RNA-seq differential expression analysis
☆15Updated 3 months ago
Alternatives and similar repositories for RNAseqChef
Users that are interested in RNAseqChef are comparing it to the libraries listed below
Sorting:
- RNAseq pipeline centered on Salmon☆27Updated 7 months ago
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆42Updated 4 years ago
- ☆12Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆64Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆26Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆103Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated 11 months ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated last month
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆75Updated this week
- Tools for working with BUS files☆101Updated last month
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆72Updated 3 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- machine-readable file format for genomic library sequence and structure☆120Updated last week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated last month
- ☆31Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated last month
- ☆40Updated last week