Alternatives and similar repositories for RNAseqChef:

Users that are interested in RNAseqChef are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 3 months ago
• Imamachi-n / NGS-Tutorial
  NGS Tutorial
  ☆15Updated 7 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆43Updated 2 years ago
• gexijin / shinygo
  ☆25Updated 2 weeks ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆28Updated last week
• gagneurlab / absplice
  ☆34Updated 5 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆42Updated 3 months ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated last year
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated last week
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆72Updated this week
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆55Updated 2 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 2 weeks ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆59Updated 3 weeks ago
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆10Updated last year
• developerpiru / BEAVR
  BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
  ☆25Updated 3 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆51Updated 3 weeks ago
• nf-core / circdna
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆28Updated 3 weeks ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆48Updated 4 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆83Updated 2 weeks ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 2 years ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆35Updated 2 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆59Updated this week
• BUStools / bustools
  Tools for working with BUS files
  ☆93Updated 4 months ago
• genome-sci / python_bioinfo_2022
  ☆11Updated 2 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆31Updated 2 years ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆48Updated 4 years ago
• Linlab-slu / TSSr
  ☆11Updated 3 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆108Updated 3 weeks ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆25Updated last month
• gexijin / idepGolem
  ☆21Updated 2 months ago