Alternatives and similar repositories for mican

Users that are interested in mican are comparing it to the libraries listed below

• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆58Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 2 months ago
• JudeWells / chainsaw
  ☆44Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 8 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆23Updated last month
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆77Updated 3 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 11 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• infernet-h2020 / DCAlign
  ☆11Updated last year
• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆32Updated 2 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆38Updated 3 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated this week
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 7 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 2 months ago
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• TattaBio / gLM2
  ☆75Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 4 years ago
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆21Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆64Updated 5 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 3 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆16Updated 11 months ago