Alternatives and similar repositories for mican

Users that are interested in mican are comparing it to the libraries listed below

• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 7 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 5 months ago
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆13Updated 3 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆108Updated 3 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• refresh-bio / protestar
  Protein Structure Archiver
  ☆12Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated last month
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆58Updated 4 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 3 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆22Updated last month
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 5 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆46Updated 2 weeks ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆45Updated 3 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆89Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 7 months ago
• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆37Updated 2 months ago
• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆20Updated 8 months ago
• i2bc / SCAN_IDR
  ☆12Updated last year