tyo-nu / MINE-DatabaseLinks
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
☆20Updated last year
Alternatives and similar repositories for MINE-Database
Users that are interested in MINE-Database are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated last month
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last week
- Metabolome Annotation Workflow☆26Updated last month
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆23Updated 3 weeks ago
- Relaunch of the initial MetFrag project.☆19Updated last week
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Updated 3 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆21Updated 2 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆53Updated last month
- RetroPath2.0 to pathways☆18Updated last week
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- ☆23Updated 8 months ago
- ☆26Updated 2 years ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆14Updated 2 weeks ago
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆54Updated last year
- ☆23Updated 5 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- Reaction Analysis through Imaging of Chemical Units☆16Updated last week
- Realtime quality control for mass spectrometry data acquisition☆20Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆43Updated 8 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 3 weeks ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Updated 2 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- DeepECtransformer☆29Updated 2 years ago
- A Python platform for Structural Bioinformatics☆58Updated 9 months ago