Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
☆22Apr 21, 2026Updated 6 months ago
Alternatives and similar repositories for MINE-Database
Users that are interested in MINE-Database are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated 9 months ago
- ☆17Jun 2, 2026Updated 4 months ago
- ☆28Mar 31, 2023Updated 3 years ago
- Reinforcement Learning based bioretrosynthesis tool☆60Apr 2, 2025Updated last year
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- JBEI Quantitative Metabolic Modeling library☆13Feb 7, 2020Updated 6 years ago
- A Multi-Modal, Multi-Energy MS2 Spectral Library☆14Oct 20, 2026Updated last week
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Bondorder and formal charge determination for molecules☆10Jan 16, 2022Updated 4 years ago
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- Monorepo for the Earth Metabolome Initiative☆10Updated this week
- Rust crate that provides an ergonomic way to define data models that are seamlessly converted into IndexedDB object stores, utilizing der…☆14Jan 12, 2025Updated last year
- Rust data structures and client for the PubChem REST API☆14Mar 20, 2023Updated 3 years ago
- A fantastic crate for formatting numbers using the appropriate unicode characters☆15Jan 13, 2026Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Python utilities for SBML☆42Oct 22, 2026Updated last week
- A container for all enzyme constrained models created by GECKO.☆19Sep 24, 2026Updated last month
- Tool to predict (bio)chemical reactions using graph mining.☆23Nov 29, 2017Updated 8 years ago
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated 2 months ago
- Site-of-Metabolsim prediction using Graph Neural Networks.☆15Mar 30, 2023Updated 3 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆26Aug 14, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Oct 7, 2026Updated 3 weeks ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- Code for quantifying the uncertainty of a PLS prediction using bootstrap prediction.☆10Jun 27, 2025Updated last year
- GNverifier verifies scientific names against more than 100 biodiversity databases☆40Jun 6, 2026Updated 4 months ago
- Search spectral library with entropy similarity☆21Oct 4, 2026Updated 3 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆45Jun 28, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- https://taxonomicallyinformedannotation.github.io/tima☆16Updated this week
- ☆11Jun 8, 2018Updated 8 years ago
- NP-KG: Knowledge Graph Framework for Natural Product-Drug Interactions☆20Jun 25, 2024Updated 2 years ago
- A cheminformatics toolkit for Rust.☆76Jun 12, 2021Updated 5 years ago
- Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool☆86Apr 5, 2026Updated 6 months ago
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆58Aug 1, 2024Updated 2 years ago
- ☆12Oct 9, 2024Updated 2 years ago