tyo-nu / MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
☆19Updated last year
Alternatives and similar repositories for MINE-Database:
Users that are interested in MINE-Database are comparing it to the libraries listed below
- RetroPath2.0 to pathways☆16Updated last year
- ☆20Updated last year
- Ms2 basEd saMple vectOrization (memo) package☆17Updated last year
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆31Updated 4 months ago
- ☆22Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆18Updated 2 weeks ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated last month
- Relaunch of the initial MetFrag project.☆18Updated 2 weeks ago
- Metabolome Annotation Workflow☆25Updated 11 months ago
- Bioactive Molecular Networks Project☆14Updated 4 years ago
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆14Updated 2 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆18Updated 3 months ago
- ☆22Updated 4 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆26Updated 2 years ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆11Updated 2 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆34Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated last year
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated last year
- A package to cluster and visualise MS/MS spectral data☆11Updated 3 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 6 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆39Updated 2 months ago
- Reaction Analysis through Imaging of Chemical Units☆14Updated 4 months ago
- DeepECtransformer☆23Updated last year
- Glycan Analysis and Glycoinformatics Library for Python☆33Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- BRENDA parser in python☆21Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 5 months ago