broadinstitute / genomics-in-the-cloud
Source code and related materials for the O'Reilly book
☆93Updated 2 years ago
Alternatives and similar repositories for genomics-in-the-cloud:
Users that are interested in genomics-in-the-cloud are comparing it to the libraries listed below
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆195Updated 3 years ago
- A proof of concept of RNAseq pipeline☆75Updated 2 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated this week
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆149Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆177Updated this week
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- Example Nextflow pipelines and programming techniques☆105Updated last month
- ☆261Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆109Updated last month
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- Documentation archive for GATK tools and workflows☆84Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- ☆82Updated 6 years ago
- Annotation and Ranking of Structural Variation☆231Updated 2 weeks ago
- Sequana: a set of Snakemake NGS pipelines☆145Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆93Updated this week
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆143Updated 2 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- GWAS Pipeline for H3Africa☆108Updated this week
- Issue tracker for the Biostar Handbook☆60Updated 2 years ago
- Long read production pipelines☆143Updated this week
- PEPPER-Margin-DeepVariant☆244Updated last year
- A small-RNA sequencing analysis pipeline☆77Updated this week
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 8 months ago
- Workflows for converting between sequence data formats☆37Updated 3 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆102Updated 7 months ago