broadinstitute / genomics-in-the-cloudView external linksLinks
Source code and related materials for the O'Reilly book
☆99Jul 28, 2022Updated 3 years ago
Alternatives and similar repositories for genomics-in-the-cloud
Users that are interested in genomics-in-the-cloud are comparing it to the libraries listed below
Sorting:
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated last year
- ☆24Nov 9, 2017Updated 8 years ago
- A structural variation pipeline for short-read sequencing☆201Feb 9, 2026Updated last week
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jan 2, 2026Updated last month
- ☆23Feb 6, 2025Updated last year
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- ☆12Jun 12, 2023Updated 2 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jun 26, 2025Updated 7 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Example jobs for popular applications on HCC clusters.☆20Updated this week
- ☆13May 16, 2016Updated 9 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆10Feb 25, 2024Updated last year
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 3 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- ☆12May 24, 2022Updated 3 years ago
- ☆12Feb 19, 2021Updated 4 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 10 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆103Jul 1, 2022Updated 3 years ago
- NGS-1 Data analysis course☆38Jul 8, 2021Updated 4 years ago
- Visualization toolkit for differential splicing events☆17Nov 3, 2025Updated 3 months ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- ☆13Apr 2, 2025Updated 10 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 4, 2026Updated last week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Data Wrangling and Processing for Genomics☆72Feb 10, 2026Updated last week
- GCP for Bioinformatics Researchers☆287May 29, 2025Updated 8 months ago
- ☆31Jan 9, 2026Updated last month
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆546Feb 10, 2026Updated last week
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated 10 months ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Feb 21, 2022Updated 3 years ago