Alternatives and similar repositories for genomics-in-the-cloud

Users that are interested in genomics-in-the-cloud are comparing it to the libraries listed below

• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆79Updated 3 months ago
• sib-swiss / statistics-and-machine-learning-training
  ☆28Updated last week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated 2 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆39Updated 4 years ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated last week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 10 months ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 3 months ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆136Updated 2 years ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• PacktPublishing / Deep-Learning-for-Genomics-
  ☆34Updated 2 years ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆129Updated last year
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆75Updated this week
• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆41Updated 2 weeks ago
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆89Updated 7 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆94Updated 4 months ago
• schatzlab / appliedgenomics2018
  Materials for Spring 2018 Applied Genomics Course
  ☆79Updated 6 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• MaayanLab / Zika-RNAseq-Pipeline
  An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
  ☆103Updated 3 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆56Updated 7 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 2 months ago
• VCCRI / Falco
  A quick and flexible single-cell RNA-seq processing framework on the cloud
  ☆39Updated 5 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 2 months ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated last week
• gatk-workflows / broad-prod-wgs-germline-snps-indels
  Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…
  ☆56Updated 5 years ago
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆86Updated 4 months ago