Alternatives and similar repositories for gcp-for-bioinformatics:

Users that are interested in gcp-for-bioinformatics are comparing it to the libraries listed below

• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆135Updated 5 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆389Updated this week
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆356Updated this week
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆93Updated 2 years ago
• Bioinformatics-Research-Network / skill-assessments
  Training requirements for joining projects
  ☆77Updated 6 months ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆161Updated 4 years ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆180Updated 3 weeks ago
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆53Updated 3 weeks ago
• BioinformaNicks / Bioinformatics-training-collection
  A collection of resources for learning about tools and programming languages related to Bioinformatics
  ☆161Updated 2 years ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆339Updated last year
• kyclark / biofx_python
  Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
  ☆212Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆333Updated 5 months ago
• hbctraining / DGE_workshop_salmon_online
  ☆186Updated 3 months ago
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆144Updated last year
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 3 years ago
• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆158Updated last month
• nextflow-io / training
  Nextflow training material
  ☆136Updated this week
• broadinstitute / warp
  WDL Analysis Research Pipelines
  ☆207Updated this week
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆419Updated this week
• pcingola / SnpEff
  ☆261Updated 2 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆403Updated 3 weeks ago
• deanslee / FigureOneLab
  Hone computational biology skills by re-enacting Figure 1 of modern biology papers
  ☆201Updated 6 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆320Updated 3 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆293Updated 2 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆252Updated 11 months ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆213Updated last week
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆451Updated 7 months ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆422Updated last year
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆310Updated 3 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆231Updated 2 months ago