Alternatives and similar repositories for azure-hpc:

Users that are interested in azure-hpc are comparing it to the libraries listed below

• microsoft / genomicsnotebook
  Jupyter Notebooks on Azure for Genomics Data Analysis
  ☆102Updated last year
• microsoft / CromwellOnAzure
  Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure
  ☆136Updated this week
• ga4gh / wiki
  a place for GA4GH-related wiki pages
  ☆16Updated 7 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆24Updated 3 weeks ago
• microsoft / tes-azure-legacy
  [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
  ☆18Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 7 months ago
• HpcGridRunner / HpcGridRunner
  source code for HpcGridRunner
  ☆17Updated 3 years ago
• NCBI-Hackathons / RNA-Seq-in-the-Cloud
  An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
  ☆18Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• FredHutch / easybuild-life-sciences
  Howto and implementation documentation
  ☆22Updated this week
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• CGGOxford / Opossum
  Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
  ☆28Updated 6 years ago
• LCR-BCCRC / lcr-modules
  Collection of standard analytical pipelines for genomic and transcriptomic data
  ☆17Updated this week
• biointec / halvade
  Parallel read alignment and variant calling using MapReduce
  ☆19Updated 6 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated last year
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated 5 months ago
• friedue / course_RNA-seq2018
  ☆11Updated 6 years ago
• seqeralabs / wave
  On-demand containers provisioning service
  ☆35Updated this week
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• Illumina / Isaac3
  Aligner for sequencing data
  ☆18Updated 7 years ago
• PawseySC / singularity-containers
  Webinars&Tutorial on Containers on HPC and Cloud with Singularity
  ☆27Updated 3 years ago
• decodebiology / geneSCF_inactive
  GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
  ☆20Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆76Updated 3 months ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• gatk-workflows / five-dollar-genome-analysis-pipeline
  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
  ☆57Updated 5 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 4 months ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆22Updated 2 months ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago