Alternatives and similar repositories for vrs

Users that are interested in vrs are comparing it to the libraries listed below

• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated last week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆125Updated last month
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated this week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆163Updated last year
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆20Updated this week
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆182Updated last year
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated last week
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆202Updated 4 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated last week
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆199Updated 4 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 7 months ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated last month
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆219Updated this week
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆189Updated this week
• mutalyzer / mutalyzer2
  HGVS variant nomenclature checker
  ☆98Updated 2 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 3 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆85Updated 9 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• konradjk / loftee
  ☆178Updated 2 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆78Updated last month
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆83Updated last week
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆87Updated 8 years ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆189Updated this week
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆32Updated 3 weeks ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago