☆24Mar 25, 2024Updated 2 years ago
Alternatives and similar repositories for public-health-pipeline-best-practices
Users that are interested in public-health-pipeline-best-practices are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics Pipeline and Visualization resources☆68Aug 30, 2024Updated 2 years ago
- PCR primer scheme definitions☆12Sep 8, 2026Updated last month
- Repository for Discussions and Materials about The Carpentries Workbench☆20Updated this week
- A data analysis of the TV show friends.☆14Dec 30, 2018Updated 7 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R Warrior - R implemention of Ruby Warrior☆10Sep 18, 2022Updated 4 years ago
- Produce scientific figures in R that look exactly how you want☆18Jan 17, 2026Updated 9 months ago
- ☆10Feb 21, 2023Updated 3 years ago
- ColabPCR: A validated Google Colaboratory Notebook for Reproducible and Precise Primer Design☆12May 4, 2026Updated 5 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Collection of scripts for bacterial genomics☆49Dec 6, 2019Updated 6 years ago
- Examples of using Perl to augment NASM and vice versa☆12Oct 21, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Sep 16, 2025Updated last year
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 5 months ago
- Dampa: Diversity Aware Metagenomic Panel Assignment☆13Oct 19, 2026Updated last week
- C code to validate a fasta file☆14Mar 2, 2021Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- ☆10Oct 9, 2024Updated 2 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python Primer Design Library☆15Mar 27, 2026Updated 7 months ago
- ☆13Oct 11, 2026Updated 2 weeks ago
- Python API for Science Parse☆13Mar 27, 2021Updated 5 years ago
- Tool for DNA species identification based on variation in short k-mer frequencies☆10Aug 4, 2026Updated 2 months ago
- ☆25Oct 6, 2026Updated 3 weeks ago
- A suite of tools to build and search generalized profiles☆11Oct 16, 2026Updated 2 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆11Jul 11, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- ☆11Oct 20, 2026Updated last week
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆16Nov 20, 2025Updated 11 months ago
- C++20 Generalized Suffix Tree implementation☆13Oct 23, 2022Updated 4 years ago
- Automatized Polygenic Score Prediction☆10Sep 21, 2026Updated last month
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month