pha4ge / public-health-pipeline-best-practicesLinks
☆17Updated last year
Alternatives and similar repositories for public-health-pipeline-best-practices
Users that are interested in public-health-pipeline-best-practices are comparing it to the libraries listed below
Sorting:
- Ultra-fast preprocessing and quality control for long-read sequencing data☆212Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- ☆176Updated 2 months ago
- Aligns short reads using dynamic seed size with strobemers☆189Updated 3 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆175Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆153Updated last week
- ☆225Updated last month
- The ARTIC fieldbioinformatics pipeline☆127Updated this week
- Pairwise whole genome aligner☆225Updated last month
- Metagenomic classification of long-read sequencing data☆97Updated last month
- ☆229Updated 11 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- List of genome assembly tools☆89Updated last week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 7 months ago
- ☆153Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆142Updated last month
- ☆81Updated 5 years ago
- Create a tree using Mash distances☆177Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆207Updated last month
- DAS Tool☆163Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆244Updated 3 weeks ago
- Long-read mock community experiments☆104Updated 4 years ago
- Long read / genome alignment software☆310Updated 3 weeks ago
- Pangenome-based genome inference☆152Updated last month
- ☆47Updated 3 weeks ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆128Updated 3 years ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago