Joseph7e / MDIBL-T3-WGS-TutorialLinks
Bacterial Genome Assembly and Assessment
☆26Updated last month
Alternatives and similar repositories for MDIBL-T3-WGS-Tutorial
Users that are interested in MDIBL-T3-WGS-Tutorial are comparing it to the libraries listed below
Sorting:
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆85Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆78Updated 8 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 9 months ago
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆157Updated 2 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- Bioinformatics Tools☆90Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆101Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- ☆81Updated last month
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Updated 3 months ago
- Effector prediction pipeline based on protein properties.☆15Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 8 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 8 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 8 months ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- ☆153Updated last year
- tiara – a tool for DNA sequence classification☆74Updated last year