Joseph7e / MDIBL-T3-WGS-TutorialLinks
Bacterial Genome Assembly and Assessment
☆26Updated last month
Alternatives and similar repositories for MDIBL-T3-WGS-Tutorial
Users that are interested in MDIBL-T3-WGS-Tutorial are comparing it to the libraries listed below
Sorting:
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆86Updated 11 months ago
- Bioinformatics tool for Locus Visualisation☆111Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- ☆72Updated this week
- ARG normalization by mapping to the ARO ontology.☆58Updated this week
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- Bioinformatics Tools☆88Updated this week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- ☆137Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆93Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- An R package designed for drawing gene arrow maps☆83Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago