microbiome-resources / Microbiome_analysis_in-_RLinks
☆16Updated 2 years ago
Alternatives and similar repositories for Microbiome_analysis_in-_R
Users that are interested in Microbiome_analysis_in-_R are comparing it to the libraries listed below
Sorting:
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- R implementation of the LEfSe method☆59Updated last month
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆15Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated 3 weeks ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- ☆12Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 7 months ago
- A microbiome analysis toolkit for R☆22Updated last year
- Analysis of (gut) microbiome in Qiime2 and R.☆20Updated 9 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- gutSMASH☆53Updated 5 months ago
- ☆23Updated 5 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 8 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago