[OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.
☆10Jan 11, 2022Updated 4 years ago
Alternatives and similar repositories for CTC-FijiPlugins
Users that are interested in CTC-FijiPlugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 6 years ago
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆17May 27, 2025Updated 11 months ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Apr 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- ☆11Mar 24, 2023Updated 3 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- J-Net: Multiresolution Neural Network for Semantic Segmentation☆10Jul 22, 2018Updated 7 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 6 months ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Apr 10, 2019Updated 7 years ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- ☆13Apr 27, 2020Updated 6 years ago
- ☆13Apr 12, 2026Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 2 months ago
- ☆38Mar 9, 2026Updated last month
- napari plugin for trackastra☆17Nov 12, 2025Updated 5 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ImageJ macros and scripts written at the imaging facility MRI☆38Apr 24, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 9 months ago
- Conversion of Electrocardiography paper records to binarization and converting to digital form in order to extract features to feed in th…☆10Dec 16, 2020Updated 5 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆22Nov 24, 2025Updated 5 months ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- Code for the paper: Image Denoising and the Generative Accumulation of Photons☆22Aug 2, 2023Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- 智慧家庭相關日記☆21Dec 31, 2025Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 2 months ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated 2 years ago
- 1d plotting in napari-based canvas.☆25Apr 21, 2026Updated last week