CellTrackingChallenge / CTC-FijiPluginsLinks
[OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.
☆10Updated 4 years ago
Alternatives and similar repositories for CTC-FijiPlugins
Users that are interested in CTC-FijiPlugins are comparing it to the libraries listed below
Sorting:
- Distributed segmentation for bio-image-analysis☆41Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- ☆21Updated last year
- python tools for BigDataViewer☆22Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- ☆13Updated 5 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Updated 4 years ago
- Annotate microscopy images for CNN classifier☆11Updated 3 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 3 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- napari plugin for trackastra☆17Updated 2 months ago
- Optimize image processing workflows in napari☆17Updated 9 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- ☆49Updated 2 months ago
- Dataset EXploration & Processing☆33Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- ☆11Updated last year
- A python algorithm for tracking cells in 3D deforming organs☆67Updated 2 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- 3D shape analysis using deep learning☆29Updated 4 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Updated 5 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year