CellTrackingChallenge / CTC-FijiPlugins
[OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.
☆10Updated 3 years ago
Alternatives and similar repositories for CTC-FijiPlugins:
Users that are interested in CTC-FijiPlugins are comparing it to the libraries listed below
- Distributed segmentation for bio-image-analysis☆36Updated 8 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated 3 weeks ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- python tools for BigDataViewer☆21Updated 2 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- ☆12Updated 4 years ago
- A general illumination correction method for optical microscopy.☆39Updated 3 years ago
- ☆20Updated 3 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆34Updated 10 months ago
- Simple watershed and agglomeration library for affinity graphs.☆20Updated 3 months ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated this week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- MorphoFeatures code and data☆20Updated last year
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆30Updated 2 months ago