mckellardw / scMuscle
The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data
☆21Updated 2 years ago
Alternatives and similar repositories for scMuscle:
Users that are interested in scMuscle are comparing it to the libraries listed below
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Visualize the results of cell-cell communication analysis☆20Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated last week
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- scWGCNA☆58Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- ☆45Updated 5 years ago
- ☆40Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- Hierarchical Cell Annotation☆20Updated 4 months ago