The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data
☆23Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for scMuscle
Users that are interested in scMuscle are comparing it to the libraries listed below
Sorting:
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- ☆11Nov 24, 2022Updated 3 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Mar 1, 2026Updated 3 weeks ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated 9 months ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 3 months ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆17Jan 16, 2026Updated 2 months ago
- Human Muscle Ageing Cell Atlas☆20Mar 8, 2024Updated 2 years ago
- ☆33Feb 26, 2025Updated last year
- ☆19Sep 29, 2021Updated 4 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- ☆14Apr 11, 2024Updated last year
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Mar 13, 2026Updated last week
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆14Nov 8, 2024Updated last year
- ☆14Jul 1, 2025Updated 8 months ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Mar 13, 2026Updated last week
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last month
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 4 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Nov 25, 2024Updated last year
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆45Feb 20, 2026Updated last month
- ☆30Sep 22, 2023Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 6 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58Jan 30, 2026Updated last month
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated last month
- Extension of SpatialExperiment with sf☆57Mar 7, 2026Updated 2 weeks ago
- ☆19Dec 15, 2023Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆30Dec 13, 2024Updated last year
- ☆17Jul 13, 2024Updated last year