Smith-Waterman local aligner
☆74Sep 29, 2022Updated 4 years ago
Alternatives and similar repositories for swalign
Users that are interested in swalign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation of Striped Smith-Waterman Algorithm☆24Mar 4, 2024Updated 2 years ago
- A Mendelian approach to variant effect prediction built in keras☆22Aug 22, 2026Updated 2 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- A simple observation count database☆11Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Jan 19, 2018Updated 8 years ago
- ☆323Jan 15, 2026Updated 9 months ago
- An extensible python-based genomics visualization engine☆145Aug 11, 2023Updated 3 years ago
- ☆11Mar 6, 2025Updated last year
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 7 months ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- ☆13Jan 23, 2020Updated 6 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Oct 16, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Pairwise Sequence Alignment Library☆289Aug 27, 2025Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆24Aug 1, 2024Updated 2 years ago
- ☆52Jun 25, 2024Updated 2 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- ☆13Oct 13, 2021Updated 5 years ago
- A python implementation of the Burrows Wheeler Alignment for DNA sequence matching☆15Aug 23, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated 7 months ago
- ☆17Oct 12, 2026Updated 2 weeks ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 3 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 3 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆22Aug 13, 2024Updated 2 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 4 years ago