mbreese / swalignLinks
Smith-Waterman local aligner
☆72Updated 3 years ago
Alternatives and similar repositories for swalign
Users that are interested in swalign are comparing it to the libraries listed below
Sorting:
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- sequence alignment. global, local, glocal.☆42Updated 9 years ago
- Simple vcf parser, based on PyVCF☆48Updated 7 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆85Updated 3 weeks ago
- Python bindings to bwa mem☆32Updated 5 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated last week
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆101Updated last year
- Platypus Variant Caller☆108Updated last year
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 8 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- All pairs search and sequence clustering☆98Updated 3 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆159Updated last month
- An extensible python-based genomics visualization engine☆145Updated 2 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- HGVS variant nomenclature checker☆98Updated 2 years ago
- HGVS variant name parsing and generation☆176Updated 2 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis