BU-ISCIII / iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
☆74Updated last week
Alternatives and similar repositories for iskylims
Users that are interested in iskylims are comparing it to the libraries listed below
Sorting:
- GA4GH Variation Representation Python Implementation☆56Updated 2 weeks ago
- Backend server for Genome Nexus☆41Updated last month
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated 2 weeks ago
- Transcript versions for HGVS libraries☆31Updated this week
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆33Updated last month
- A small-RNA sequencing analysis pipeline☆84Updated 2 weeks ago
- Project Manager for NGS data analysis☆30Updated 2 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated this week
- A Python package for pharmacogenomics (PGx) research☆73Updated 3 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- ☆94Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- Extensible specification for representing and uniquely identifying biological sequence variation☆88Updated last month
- ☆9Updated 6 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Ensembl tools☆34Updated 3 weeks ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆64Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆87Updated 2 weeks ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Test data to be used for automated testing with the nf-core pipelines☆126Updated this week
- An information model for representing variant annotations.☆18Updated this week
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Fast HLA type inference from whole-genome data☆134Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Galaxy RNA workbench☆40Updated 4 years ago