BU-ISCIII / iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
☆72Updated 2 months ago
Alternatives and similar repositories for iskylims:
Users that are interested in iskylims are comparing it to the libraries listed below
- Sequana: a set of Snakemake NGS pipelines☆145Updated this week
- A small-RNA sequencing analysis pipeline☆77Updated this week
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆77Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆109Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆113Updated this week
- Long read production pipelines☆143Updated this week
- GA4GH Variation Representation Python Implementation☆52Updated 3 weeks ago
- Demultiplexing pipeline for sequencing data☆45Updated this week
- ☆94Updated 2 years ago
- All source code of the crispor.org website☆74Updated 3 weeks ago
- List of computational resources for analyzing microbial sequencing data.☆66Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 10 months ago
- a Medical Genetics Sequence Analysis Pipeline☆80Updated this week
- A Python package for pharmacogenomics (PGx) research☆66Updated 5 months ago
- Python programs for processing GFF3 files☆96Updated 10 months ago
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆31Updated 3 weeks ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆89Updated 5 months ago
- Nextflow Tower system☆148Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated last month
- Fast HLA type inference from whole-genome data☆133Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 3 weeks ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆117Updated 10 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆64Updated last year
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated last year
- SeqMonk NGS visualisation and analysis tool☆49Updated 3 weeks ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆80Updated last week