Alternatives and similar repositories for NetMedPy

Users that are interested in NetMedPy are comparing it to the libraries listed below

• KechrisLab / SmCCNet
  A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.
  ☆32Updated last year
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆44Updated 4 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 7 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆45Updated 2 months ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 7 months ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆37Updated 10 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated last year
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆29Updated 5 months ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆40Updated 2 weeks ago
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆41Updated 2 weeks ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆20Updated 5 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 3 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• collinwa / MCFA
  ☆21Updated 2 years ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 7 months ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆62Updated last year
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆93Updated 6 months ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆66Updated 4 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆34Updated 9 months ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 3 months ago
• cran / SNFtool
   This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion
  ☆23Updated 4 years ago
• gregbellan / Stabl
  ☆66Updated last year
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated last year
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆61Updated 5 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago