alberto-valdeolivas / RandomWalkRestartMHLinks
A package to perform Random Walk with Restart on different types of networks
☆22Updated 2 years ago
Alternatives and similar repositories for RandomWalkRestartMH
Users that are interested in RandomWalkRestartMH are comparing it to the libraries listed below
Sorting:
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Tools for manipulating annotated data matrices☆92Updated 4 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Rphenograph: R implementation of the PhenoGraph algorithm☆51Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆64Updated last month
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- ☆43Updated 5 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- ☆61Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- A General Framework for Consensus Partitioning☆65Updated 11 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Updated 7 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆59Updated 5 years ago