Alternatives and similar repositories for SNFtool

Users that are interested in SNFtool are comparing it to the libraries listed below

• maxconway / SNFtool
  Similarity Network Fusion
  ☆32Updated 10 years ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• cantinilab / momix-notebook
  ☆67Updated last year
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated 2 years ago
• angy89 / RobustSparseCorrelation
  This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…
  ☆13Updated 6 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆55Updated 11 months ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• srp33 / ShinyLearner
  ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms
  ☆18Updated 3 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• anders-biostat / sleepwalk
  Exploring dimension-reduced embeddings
  ☆110Updated 3 years ago
• theorod93 / sCCA
  Sparse Canonical Correlation Analysis (sCCA)
  ☆20Updated 3 years ago
• ncchung / jackstraw
  Statistical Inference for Unsupervised Learning
  ☆16Updated 8 months ago
• willtownes / glmpca
  ☆95Updated last year
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆106Updated 2 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆54Updated last year
• SofieVG / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆65Updated last year
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• msantolini / dynamo
  DYNamics Agnostic Network MOdels
  ☆18Updated 7 years ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 6 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• BatzoglouLabSU / SIMLR
  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…
  ☆113Updated 5 months ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆41Updated 4 years ago