ratan-lab / sumoLinks
Subtyping tool for multi-omic data
☆13Updated 2 years ago
Alternatives and similar repositories for sumo
Users that are interested in sumo are comparing it to the libraries listed below
Sorting:
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated this week
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆17Updated 6 years ago
- Representation and manipulation of genomic intervals☆46Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated 10 months ago
- R package for genomic feature analysis and visualization☆78Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- BigWig and BAM utilities☆96Updated last year
- R package containing useful functions for mutational signature analysis☆81Updated this week
- Glimma R package☆50Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Statistical power studies for multi-omics experiments.☆31Updated 4 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆37Updated this week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆84Updated 4 months ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- R package wrapping bedtools☆41Updated 2 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- workshop website on readthedocs☆19Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated this week
- Lightweight Iterative Gene set Enrichment in R☆56Updated 8 months ago
- Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses☆9Updated 2 years ago
- DESeq2 or edgeR☆22Updated 8 years ago