massonix / code_snippets
A collection of code snippets for different tasks
☆9Updated last year
Related projects ⓘ
Alternatives and complementary repositories for code_snippets
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 3 weeks ago
- ☆28Updated 4 months ago
- tools and notes for long reads analysis☆19Updated 8 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- A tidy interface for coverage analysis☆24Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- ☆20Updated 2 months ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆40Updated 11 months ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆37Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆21Updated last week
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 6 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 2 months ago
- Identify and correct invalid gene symbols☆55Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆52Updated last year
- Visualise correlation results and test significancies of these☆21Updated 4 years ago
- ☆16Updated last year
- Merge fastq files split over lanes☆19Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Genomic data interpretation and visualization Workshop☆18Updated last year
- An R interface to the MEME Suite☆46Updated last month
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Motif manipulation functions for R.☆25Updated last week