genouest / biomajLinks
BioMAJ
☆13Updated 11 months ago
Alternatives and similar repositories for biomaj
Users that are interested in biomaj are comparing it to the libraries listed below
Sorting:
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Updated 10 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- Docker images of bioinformatics software☆21Updated 8 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Set of tools for viral metagenomics.☆14Updated last month
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- A web wrapper for GeneValidator☆11Updated 4 years ago
- GeneValidator: Identify problems with predicted genes☆47Updated last year
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Phylogenetic tree viewer based on D3.js☆57Updated last year
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- Explore and analyze biological sequence data☆16Updated last year
- Bremges et al. (2015). GigaScience, 4:33.☆12Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- The MG-RAST pipeline☆23Updated 2 years ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- ☆37Updated 4 months ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Updated 7 years ago
- Generate mutated sequence files from a reference genome.☆12Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆17Updated 7 years ago