Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust π¦
β16Sep 16, 2026Updated this week
Alternatives and similar repositories for sparrowhawk-asm
Users that are interested in sparrowhawk-asm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast sequence distance estimatesβ34Aug 24, 2026Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifierβ22Jun 24, 2026Updated 2 months ago
- Fast DNA search and [host] depletion using minimizersβ126Sep 9, 2026Updated last week
- gemsparcl πβ¨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic lifeβ18Jun 16, 2026Updated 3 months ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.β15Jun 17, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)β24Mar 13, 2025Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graphβ58Mar 13, 2025Updated last year
- Split k-mer analysis β version 2β106Jul 9, 2026Updated 2 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inferenceβ17Nov 19, 2025Updated 10 months ago
- Minimum plain text representation of kmer setsβ19Jan 30, 2025Updated last year
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomesβ29Jul 26, 2026Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ39Aug 21, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ22Aug 19, 2026Updated last month
- Overview of our data for microbial genomic benchmarkingβ41Jun 19, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Taxonomy classification of viral sequences / contigsβ13Jul 15, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applicationsβ19Jul 9, 2026Updated 2 months ago
- Genomewide Epistasis Analysis on Bacteriaβ15Aug 7, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.β72Apr 10, 2025Updated last year
- β20Updated this week
- β28May 22, 2025Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ50Aug 19, 2026Updated last month
- β17Apr 6, 2023Updated 3 years ago
- Mycobacterium tuberculosis complex lineage typingβ10Jun 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Shared k-mer content between two genomesβ19Jun 21, 2023Updated 3 years ago
- β27Jun 16, 2026Updated 3 months ago
- a simple tool for listing conda environments with descriptionsβ16Mar 28, 2025Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.β21Aug 26, 2026Updated 3 weeks ago
- A SIMD-accelerated library to compute random minimizersβ47Aug 26, 2026Updated 3 weeks ago
- Needleman-Wunsch Alignment in Goβ12Nov 9, 2020Updated 5 years ago
- An extensible and performant aligner and read mapperβ105Updated this week
- Bifrost graph gene caller.β101Aug 31, 2026Updated 2 weeks ago
- Β΅binfie blogβ19Jul 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust-based library for phylogenetic analysis and manipulationβ22Aug 8, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy readsβ169Sep 9, 2026Updated last week
- Genome browser π§¬ππβ35Aug 24, 2026Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assembliesβ14Jun 30, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomesβ14Sep 12, 2025Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).β11Jul 20, 2025Updated last year
- Ultra-rapid detection of viral variants directly from sequencing dataβ47Updated this week