NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www.nipgr.res.in/ngsqctoolkit.html)
☆16Mar 19, 2021Updated 5 years ago
Alternatives and similar repositories for NGSQCToolkit
Users that are interested in NGSQCToolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- ☆12Sep 4, 2022Updated 3 years ago
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆23Jun 8, 2024Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 10 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆30May 13, 2025Updated 11 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 4 months ago
- ☆18Jan 14, 2026Updated 3 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- ☆29Jul 16, 2022Updated 3 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 7 months ago
- Post-verkko graph and assembly curation in Python.☆18Apr 9, 2026Updated last week
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- ☆15Nov 7, 2014Updated 11 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆41Mar 1, 2026Updated last month
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆35Feb 26, 2026Updated last month
- MI-BCI is the acronym for minimal invasive brain-computer interface (BCI). The repository is the sample code for the paper "Intracranial…☆10Jun 12, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Receives and processes the UDP Telemetry data of the Codemasters' Formula One game.☆10Jul 8, 2018Updated 7 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆34Apr 7, 2026Updated last week
- 使用Python Flask开发的一个web可视化的server监控程序，目前可以实时的监控http server和redis server的信息。☆10May 25, 2016Updated 9 years ago
- ☆10May 17, 2022Updated 3 years ago
- Telomere compliment tools☆28Nov 17, 2025Updated 5 months ago
- ☆45Dec 11, 2025Updated 4 months ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- A set of R functions that help faciliate a lot of tedious processing☆18Aug 31, 2018Updated 7 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Writing a custom connection for R☆16May 15, 2025Updated 11 months ago
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 8 months ago
- TR annotation tool VAMPIRE☆18Updated this week
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 2 years ago
- Calculate voronoi-style polygons based on route distances / durations☆12Apr 16, 2025Updated last year
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆23Feb 23, 2026Updated last month
- ☆45Jul 23, 2025Updated 8 months ago