Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
☆16Feb 3, 2026Updated last month
Alternatives and similar repositories for sequence-stats
Users that are interested in sequence-stats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- ☆14Oct 27, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 5 months ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 4 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Oct 25, 2024Updated last year
- ☆25Apr 20, 2023Updated 2 years ago
- Various Ideas for Protein Masked LM with ESMFold/ESM-2☆15Aug 17, 2023Updated 2 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- Webserver and command line tool for annotating engineered plasmids☆17Sep 25, 2024Updated last year
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Restart the budgie panel, WM or both from your Budgie desktop☆12Jan 8, 2019Updated 7 years ago
- Importing and manipulating Hi-C data in R☆12Jul 17, 2025Updated 8 months ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 5 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 8 months ago
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆20Oct 22, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- My first JEKYLL-THEME☆14Jul 23, 2016Updated 9 years ago
- Yet Another Pinterest Clone☆25May 4, 2013Updated 12 years ago
- A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.☆19Feb 23, 2026Updated last month
- Analyzing Hi-C data in R with HiCExperiment objects☆16Mar 18, 2025Updated last year
- Basic Sequence Taxonomy Annotator☆44May 14, 2024Updated last year
- ☆42May 19, 2025Updated 10 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 8 months ago
- Datably.ai☆17Jun 17, 2025Updated 9 months ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- 🎓 Awesome resources to use in the classroom, while reviewing code, and when writing tutorials, lesson plans/objectives.☆17Aug 13, 2020Updated 5 years ago