Alternatives and similar repositories for struct-lmm

Users that are interested in struct-lmm are comparing it to the libraries listed below

• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆14Updated 8 months ago
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆15Updated 5 years ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• mararie / lionessR
  Single sample network reconstruction in R
  ☆23Updated 5 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 8 years ago
• lukejoconnor / LCV
  Software implementing the Latent Causal Variable Model
  ☆64Updated 5 years ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 3 weeks ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆83Updated last week
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆78Updated 5 years ago
• stephenslab / mvsusieR
  A new model and algorithm for multivariate Bayesian variable selection regression.
  ☆21Updated last week
• lsncibb / SummaryAUC
  Calculate AUC based on GWAS summary statistics only
  ☆10Updated 7 years ago
• lindgrengroup / fatdistnGWAS
  Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
  ☆22Updated 6 years ago
• pjnewcombe / R2BGLiMS
  R wrapper for a Java Bayesian GLM variable selection package
  ☆17Updated 5 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆13Updated last year
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 11 months ago
• PheWAS / PhecodeX
  ☆20Updated last month
• yaowuliu / ACAT
  ☆36Updated 4 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 3 weeks ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 4 years ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆41Updated 4 years ago
• ncchung / jackstraw
  Statistical Inference for Unsupervised Learning
  ☆16Updated 10 months ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• anna-neufeld / countsplit
  ☆21Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago