limix / struct-lmm
Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
☆14Updated 4 years ago
Alternatives and similar repositories for struct-lmm:
Users that are interested in struct-lmm are comparing it to the libraries listed below
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- A new model and algorithm for multivariate Bayesian variable selection regression.☆21Updated 11 months ago
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- Data and code for the Effector index☆13Updated 4 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- R wrapper for a Java Bayesian GLM variable selection package☆16Updated 5 years ago
- LDlinkR☆58Updated last year
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆14Updated 4 years ago
- ☆31Updated 6 months ago
- ☆17Updated 8 months ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- PRS pipeline using PRS_CS☆13Updated 2 months ago
- Code for implementing Mendelian randomization investigations☆17Updated 9 years ago
- Colocalisation pipeline for Open Targets Genetics☆17Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 10 months ago
- Calculate AUC based on GWAS summary statistics only☆10Updated 6 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- An R package for generating comparative regional association plots☆18Updated 4 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated last year
- ☆13Updated 2 months ago
- ☆23Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- ☆32Updated 3 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆24Updated 3 years ago
- LASSO for GWAS with summary statistics☆74Updated 4 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆18Updated 10 months ago