limix / struct-lmmLinks
Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
☆14Updated 5 years ago
Alternatives and similar repositories for struct-lmm
Users that are interested in struct-lmm are comparing it to the libraries listed below
Sorting:
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆15Updated 5 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆20Updated 4 years ago
- R package: determining cutoff values from bimodal data☆11Updated last year
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆84Updated 3 weeks ago
- Gene-level general linear mixed model☆24Updated 3 months ago
- An R package for generating comparative regional association plots☆18Updated 3 months ago
- A rapido and lightweight method for PGS computation☆14Updated 11 months ago
- Single sample network reconstruction in R☆24Updated 5 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆19Updated last year
- ☆21Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆20Updated 2 years ago
- Calculate AUC based on GWAS summary statistics only☆10Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 5 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 8 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆20Updated last week
- An R package for multivariate adaptive shrinkage.☆91Updated last year
- A new model and algorithm for multivariate Bayesian variable selection regression.☆23Updated last month
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated last year
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 7 years ago