Alternatives and similar repositories for DEEP_NLP

Users that are interested in DEEP_NLP are comparing it to the libraries listed below

• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• rockt / SETH
  SNP Extraction Tool for Human Variations
  ☆27Updated last year
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated last month
• jakelever / biowordlists
  Biomedical wordlists (of drugs, genes, etc) for several text mining projects
  ☆18Updated 2 years ago
• mxxdxxx / web-TCGA
  A light weight shiny based web app to access TCGA data
  ☆14Updated 10 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• chop-dbhi / drug_word_embeddings
  development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank
  ☆14Updated 8 years ago
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 7 years ago
• rezacsedu / Convolutional-embedded-networks
  Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
  ☆11Updated 5 years ago
• BaderLab / saber
  Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …
  ☆102Updated 5 years ago
• jakelever / cancermine
  Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
  ☆41Updated 2 years ago
• CogStack / nlp2phenome
  using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
  ☆10Updated 2 years ago
• wenjiegroup / BiRen
  ☆13Updated 6 years ago
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆14Updated last year
• Rostlab / nalaf
  NLP framework in python for entity recognition and relationship extraction
  ☆115Updated 2 years ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• yeminlan / ADEpigenetics
  Main codes for AD epigenetics paper by Nativio et al.
  ☆11Updated 5 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆20Updated 2 years ago
• jiagengjie / Estimating-Genetic-Parameters
  ☆10Updated 4 years ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆26Updated 2 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 4 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆18Updated 8 years ago
• bwlewis / 1000_genomes_examples
  Examples using R and 1000 genomes data
  ☆28Updated 4 years ago
• idc9 / py_jive
  A data analysis package for high-dimensional, multi-block data.
  ☆12Updated 3 years ago