A suite of javascript apps for visualizing sequencing data
☆12Nov 18, 2013Updated 12 years ago
Alternatives and similar repositories for seeker
Users that are interested in seeker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- a fast, interactive, light-weight, customizable, web-based comparative genomics viewer with simple text input format.☆10Aug 5, 2011Updated 15 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated this week
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Jul 22, 2020Updated 6 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Conversion XSLTs for NCBI Eutilities XML to JSON☆15Nov 9, 2016Updated 9 years ago
- A research blogging tool written in Python using Flask.☆12Jun 18, 2014Updated 12 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 11 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- Processing Abnormal Read-Pairs☆15Jul 24, 2009Updated 17 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 15 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Process management library☆18Aug 17, 2022Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM an…☆38Sep 27, 2018Updated 8 years ago
- ☆40Sep 14, 2016Updated 10 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated last year
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 9 years ago
- Horizon chart js library for DNA data.☆62Apr 30, 2016Updated 10 years ago
- An ASCII-art based data flow management system☆18Dec 11, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Common charts/graphs in ruby by generating JSON for Vega Spec.☆14Apr 27, 2013Updated 13 years ago
- Bloom filter implementation in Nimrod☆16May 26, 2023Updated 3 years ago
- fast bloomfilter☆21May 13, 2014Updated 12 years ago
- Interfacing R's Spectra package with the Python world.☆13May 12, 2026Updated 5 months ago