Framework for running text mining tools on latest publications. Main page at:
☆15Jul 13, 2022Updated 3 years ago
Alternatives and similar repositories for PubRunner
Users that are interested in PubRunner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of scie…☆25Sep 28, 2015Updated 10 years ago
- Classify web visitor queries so you can chart, and respond to, trends in information seeking☆14Sep 7, 2023Updated 2 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- Publication and sharing with Jupyter notebooks for reproducible research☆10May 10, 2019Updated 6 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Mar 11, 2018Updated 8 years ago
- Crowd-source tool to annotate, rank and generally enhance the clarity and accuracy of clinical trial information.☆16Mar 6, 2023Updated 3 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 5 years ago
- The BioJS MSA viewer wrapped into an R package☆12Sep 27, 2016Updated 9 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- PyPI package for traversing extremely large FTP directory trees☆18Dec 18, 2017Updated 8 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- Application for hosting gene expression and ontology data with Shiny☆17Jan 8, 2018Updated 8 years ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 7 years ago
- Quick access to gene synonyms☆29Updated this week
- Smart search engine for all bioinformatics databases worldwide☆27Dec 16, 2017Updated 8 years ago
- My résumé/CV in LaTeX☆12Jun 3, 2024Updated last year
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons☆25Jul 3, 2016Updated 9 years ago
- Tool for RNA-Seq analysis.☆39Apr 1, 2022Updated 4 years ago
- A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform☆56Jan 8, 2023Updated 3 years ago
- Sonification middleware☆12Oct 7, 2020Updated 5 years ago
- A Wikidata puzzle game☆19Nov 5, 2016Updated 9 years ago
- generate code_swarm data from Wikipedia page histories & user contributions☆25Nov 19, 2008Updated 17 years ago
- ShinyApp: Shiny What You See Is What You Get (WYSIWYG) editor☆29Nov 9, 2020Updated 5 years ago
- ☆10May 17, 2017Updated 8 years ago
- ☆15Aug 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a web based tool to monitor how your website content is used in wikipedia☆37Oct 22, 2020Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Berkeley's Data8 Infrastructure specific documentation & guides☆10Jun 22, 2020Updated 5 years ago
- Python Hyptertext Preprocessor☆11Jan 26, 2022Updated 4 years ago
- [DEPRECATED] Intelligent media curation tool with filters for managing real-time feeds of information☆23Sep 26, 2011Updated 14 years ago
- ☆17Feb 6, 2018Updated 8 years ago