Alternatives and similar repositories for PubRunner:

Users that are interested in PubRunner are comparing it to the libraries listed below

• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• vjcitn / CSHstats
  R vignettes/pkgdown for elementary statistics for a summer course
  ☆14Updated last month
• DataBiosphere / data-browser
  ☆11Updated this week
• audy / smalldata
  Small(-ish) datasets for fun and teaching
  ☆17Updated 8 years ago
• datasnakes / renv
  Creating virtual environments for R.
  ☆17Updated 5 years ago
• leekgroup / derfinder
  R package for DER Finder, a method for differential expression analysis of RNA-seq data
  ☆22Updated 9 years ago
• SuLab / mark2cure
  Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.
  ☆14Updated 2 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 4 months ago
• MaayanLab / FAIRshake
  ☆10Updated 4 months ago
• greenelab / onboarding
  Onboarding materials for the Greene Lab
  ☆31Updated 2 months ago
• biohackathons / biohackathons.github.io
  International BioHackathon Directory of Events, Projects and Communities
  ☆10Updated last week
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆63Updated 4 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• auerbachs / BMDExpress-2
  Software for analyzing high dimensional dose-response data
  ☆19Updated 6 months ago
• bendmorris / taxiphy
  Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
  ☆16Updated 9 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• grst / reportsrender
  Render HTML reports from parametrized jupyter notebooks or Rmarkdown documents.
  ☆9Updated 3 months ago
• jasdumas / shinyGEO
  Gene Expression Omnibus Analysis with Shiny
  ☆41Updated 2 years ago
• bioinformatics-core-shared-training / Managing-your-research-data
  Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
  ☆18Updated last year
• greenelab / scrumlord
  Continuous administration of the Greene Lab's electronic scrum
  ☆13Updated this week
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated 11 months ago
• quelopes / GeNNet
  Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.
  ☆10Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• Reproducible-Science-Curriculum / publication-RR-Jupyter
  Publication and sharing with Jupyter notebooks for reproducible research
  ☆10Updated 5 years ago
• michaelbarton / bioinformatics-career-survey
  Survey of bioinformatics field
  ☆26Updated 12 years ago
• JasonJWilliamsNY / 2018_nih_datascience_rfi
  This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science
  ☆16Updated 6 years ago