Alternatives and similar repositories for pyDAEDALUS:

Users that are interested in pyDAEDALUS are comparing it to the libraries listed below

• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• ncbi / SSDraw
  ☆85Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆33Updated 2 years ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated last month
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆51Updated 3 months ago
• pstansfeld / MemProtMD
  ☆38Updated 3 weeks ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 4 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 3 weeks ago
• maslov-group / DR-BERT
  ☆22Updated 2 years ago
• conradry / prtm
  Deep learning for protein science
  ☆33Updated 10 months ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆29Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• JudeWells / chainsaw
  ☆38Updated 7 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆54Updated last month
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• rjdkmr / do_x3dna
  To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
  ☆25Updated last week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆33Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 3 weeks ago
• lcbb / athena
  A GUI for automated sequence design of wireframe scaffolded DNA origami
  ☆14Updated 3 years ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆52Updated 3 months ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆54Updated last month
• ginkgobioworks / ginkgoai-protein-embedding-tutorial
  Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
  ☆19Updated 5 months ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated 8 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆95Updated last year
• cmbi / dssp
  The DSSP building software
  ☆43Updated last year