Alternatives and similar repositories for pyDAEDALUS

Users that are interested in pyDAEDALUS are comparing it to the libraries listed below

• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated 3 months ago
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• ncbi / SSDraw
  ☆85Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 6 months ago
• ginkgobioworks / ginkgoai-protein-embedding-tutorial
  Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
  ☆19Updated 7 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 5 months ago
• pstansfeld / MemProtMD
  ☆42Updated last month
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆112Updated this week
• mirabdi / PDAnalysis
  ☆32Updated last year
• duerrsimon / folding_tools
  A collection of *fold* tools
  ☆21Updated 2 years ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆68Updated last month
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 3 weeks ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆76Updated 4 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 6 years ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆47Updated 2 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆59Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 3 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆54Updated 7 months ago
• google-deepmind / protex
  ☆19Updated 8 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆67Updated last year
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆44Updated last year
• lcbb / PERDIX
  Designer scaffolded DNA DX-based wireframe lattices
  ☆14Updated 6 years ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆37Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆59Updated 7 months ago
• meyresearch / BALM
  Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models
  ☆27Updated 6 months ago