This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami
☆20May 11, 2026Updated 2 months ago
Alternatives and similar repositories for pyDAEDALUS
Users that are interested in pyDAEDALUS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 8 years ago
- Python scripting library for generating designs readable by scadnano.☆18Aug 1, 2026Updated last week
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆21Jul 7, 2022Updated 4 years ago
- DNA origami design tool☆40Jan 18, 2024Updated 2 years ago
- A GUI for automated sequence design of wireframe scaffolded DNA origami☆14Nov 3, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A collection of tools for DNA modelling☆25Jun 4, 2026Updated 2 months ago
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆59Jul 10, 2026Updated last month
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago
- Web application for designing DNA structures such as DNA origami.☆36Updated this week
- Python tool for auto-breaking DNA origami staples☆17Jul 24, 2026Updated 2 weeks ago
- An Autodesk Maya plugin for modelling DNA based structures☆18Jun 11, 2014Updated 12 years ago
- PyQt4 version of cadnano with Maya integration☆15Jun 21, 2018Updated 8 years ago
- ☆27Feb 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python module for analysis of behavorial data☆14Jun 15, 2026Updated last month
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 11 months ago
- The standalone code to simulate the oxDNA/oxRNA models, now equipped with Python bindings and the oxDNA_analysis_tools suite☆74Jul 13, 2026Updated 3 weeks ago
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated 2 years ago
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 10 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- ☆13Mar 17, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MSSR Plugin☆14Oct 30, 2024Updated last year
- SpectraFox is a free tool for managing, processing, and evaluating scientific scanning probe microscopy (SPM) data-files. For example, da…☆16Oct 18, 2023Updated 2 years ago
- Document binarization using deep learning☆10Dec 31, 2020Updated 5 years ago
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆45Aug 2, 2023Updated 3 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Generate usage documentation in Markdown format from Python scripts using argparse☆17Jun 18, 2026Updated last month
- Source code for the DeepViral paper☆12Mar 17, 2021Updated 5 years ago
- [AAAI 2024 (Oral)] Safety-MuJoCo Environments.☆12Jun 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LDPC codes for Illumina sequencing-based DNA storage☆11Dec 2, 2020Updated 5 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated 2 years ago
- Repository of the data for PLUMED Masterclass 22.3☆15Jul 10, 2024Updated 2 years ago
- End-to-end ML workflow based on the talk I gave in CHE596.☆12Jul 26, 2024Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors☆13Aug 13, 2020Updated 5 years ago