sulcgroup / oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
☆20Updated 2 years ago
Alternatives and similar repositories for oxdna_analysis_tools:
Users that are interested in oxdna_analysis_tools are comparing it to the libraries listed below
- ☆39Updated last year
- Set of useful HADDOCK utility scripts☆51Updated 7 months ago
- Analysis of alphafold and colabfold results☆27Updated 2 weeks ago
- ☆38Updated 3 weeks ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆68Updated 2 weeks ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆16Updated 2 weeks ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆43Updated 3 months ago
- PyDock Tutorial☆30Updated 6 years ago
- RosettaDesign using PyRosetta☆30Updated 5 years ago
- Explicit crosslinks in AlphaFold 3☆21Updated last month
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- A collection of tools for DNA modelling☆19Updated 11 months ago
- ☆57Updated last week
- A Consensus Docking Plugin for PyMOL☆72Updated 10 months ago
- Molecular Dynamics for Experimentalists☆55Updated 3 weeks ago
- ☆16Updated 2 weeks ago
- Modelling of Large Protein Complexes☆37Updated last year
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆42Updated last year
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆18Updated 9 months ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 8 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆30Updated last year
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated last month
- Pymol ScrIpt COllection (PSICO)☆59Updated 9 months ago
- Notebooks and environment set up for IQB 2024 workshop - Python for Molecular Docking☆57Updated 3 months ago
- Interactive Python notebooks for PDBe API training☆52Updated 3 months ago
- MM/PBSA binding free energy calculation☆23Updated 10 months ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆32Updated last year
- ☆29Updated 3 years ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆68Updated last year