sulcgroup / oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
☆19Updated 2 years ago
Alternatives and similar repositories for oxdna_analysis_tools:
Users that are interested in oxdna_analysis_tools are comparing it to the libraries listed below
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆75Updated 10 months ago
- ☆33Updated 2 months ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 7 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 6 months ago
- ☆46Updated 3 months ago
- Set of useful HADDOCK utility scripts☆51Updated 6 months ago
- ☆14Updated 3 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- ☆39Updated last month
- ☆84Updated last year
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆18Updated last week
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆94Updated last year
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆65Updated 5 months ago
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆34Updated last year
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆15Updated this week
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 9 months ago
- Modelling of Large Protein Complexes☆37Updated last year
- ☆38Updated last year
- PyDock Tutorial☆30Updated 6 years ago
- Protein Structure Analysis☆53Updated 2 months ago
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆40Updated last week
- ☆80Updated 5 months ago
- ☆28Updated 3 years ago
- Simple protein-ligand complex simulation with OpenMM☆81Updated last year
- ☆52Updated last year
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆29Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆148Updated 2 weeks ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆32Updated 11 months ago
- Python interface for the RCSB PDB search API.☆59Updated 3 months ago