sulcgroup / oxdna_analysis_toolsLinks
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
☆20Updated 3 years ago
Alternatives and similar repositories for oxdna_analysis_tools
Users that are interested in oxdna_analysis_tools are comparing it to the libraries listed below
Sorting:
- A collection of tools for DNA modelling☆22Updated 2 months ago
- Software for biomolecular electrostatics and solvation calculations☆114Updated last year
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆74Updated 6 months ago
- Set of useful HADDOCK utility scripts☆55Updated last month
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆84Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Analysis of alphafold and colabfold results☆32Updated last month
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆97Updated 2 years ago
- Predict the binding affinity of protein-protein complexes from structural data☆150Updated 3 weeks ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆120Updated 2 years ago
- Modelling of Large Protein Complexes☆37Updated 2 months ago
- ☆57Updated 3 years ago
- Protein folding in Pymol☆123Updated 2 weeks ago
- Calculation of interatomic interactions in molecular structures☆81Updated 3 years ago
- RosettaDesign using PyRosetta☆32Updated 6 years ago
- Create DSSP and HSSP files☆94Updated last year
- A command-line interface and Python library for generating AlphaFold3 input files.☆37Updated 4 months ago
- ☆41Updated last year
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆52Updated 2 months ago
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated 4 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆114Updated last year
- AlphaFold-initiated replica exchange protein docking☆84Updated 4 months ago
- Slides + Iframe = sliFrame☆55Updated 6 months ago
- Python implementation of the Ramachandran plot☆52Updated 3 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆163Updated 3 weeks ago
- Official repo of the modular BioExcel version of HADDOCK☆198Updated last week
- Material from papers from KULL centre☆71Updated last year
- A simple Python library to generate model peptides☆88Updated 4 years ago
- Efficient manipulation of protein structures in Python☆58Updated last month