A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
☆21Jul 7, 2022Updated 3 years ago
Alternatives and similar repositories for oxdna_analysis_tools
Users that are interested in oxdna_analysis_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of tools for DNA modelling☆25Jun 4, 2026Updated last week
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆56May 6, 2026Updated last month
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆19May 11, 2026Updated last month
- SNUPI (Structured NUcleic-acids Programming Interface)☆15Feb 19, 2025Updated last year
- Python scripting library for generating designs readable by scadnano.☆17Apr 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DNA origami design tool☆39Jan 18, 2024Updated 2 years ago
- Computational analysis of nucleic acids structures using graph neural networks☆15Mar 25, 2024Updated 2 years ago
- Cadnano2☆61Feb 12, 2025Updated last year
- ENSnano, a 3D graphical application for DNA nanostructures.☆53Dec 15, 2023Updated 2 years ago
- PyQt5 version of cadnano☆73Nov 15, 2023Updated 2 years ago
- Web application for designing DNA structures such as DNA origami.☆34May 28, 2026Updated 2 weeks ago
- A software package to identify and locate knots in polymers☆14Nov 20, 2022Updated 3 years ago
- PyQt4 version of cadnano with Maya integration☆15Jun 21, 2018Updated 7 years ago
- Ask ChatGPT to write bash scripts directly from your terminal☆22Mar 13, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RDKit中文教程☆16Jun 21, 2020Updated 5 years ago
- A tutorial code to perform Monte Carlo simulations of patchy particles☆12Dec 1, 2025Updated 6 months ago
- ☆18Jan 13, 2023Updated 3 years ago
- Python image tiling library for image processing, object detection, etc.☆12Jul 25, 2024Updated last year
- ☆10Sep 29, 2022Updated 3 years ago
- Handwriting is a plugin for Reveal.js.☆15Aug 4, 2020Updated 5 years ago
- Computational materials design, with less code.☆13May 18, 2026Updated 3 weeks ago
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated last year
- Solvent Accessible Surface Areas of Biomolecules and their Complexes☆19Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 9 months ago
- Scripts for building, training and validating CNNs for Connectomics☆12Mar 24, 2023Updated 3 years ago
- [AAAI 2024 (Oral)] Safety-MuJoCo Environments.☆11Jun 4, 2024Updated 2 years ago
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆45Aug 2, 2023Updated 2 years ago
- Unofficial implementation of the paper I2V-Adapter: A General Image-to-Video Adapter for Video Diffusion Models.☆19Mar 13, 2024Updated 2 years ago
- DNA-based End-to-End Encrypted EFS Database created using Python 🧬☆10Dec 21, 2023Updated 2 years ago
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated 2 years ago
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆17Apr 12, 2022Updated 4 years ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository of the data for PLUMED Masterclass 22.3☆14Jul 10, 2024Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- ☆15Apr 13, 2025Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- End-to-end ML workflow based on the talk I gave in CHE596.☆12Jul 26, 2024Updated last year