Alternatives and similar repositories for CATHe

Users that are interested in CATHe are comparing it to the libraries listed below

• JudeWells / chainsaw
  ☆43Updated 11 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆40Updated 2 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆54Updated 7 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆30Updated 2 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated 3 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆58Updated 5 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated this week
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated last week
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 2 months ago
• TattaBio / gLM2
  ☆72Updated 10 months ago
• PDB-REDO / AlphaBridge
  ☆40Updated 3 weeks ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆44Updated 2 weeks ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 3 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆68Updated 8 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆29Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 2 months ago