vam-sin / CATHeLinks
Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH superfamilies
☆15Updated 3 years ago
Alternatives and similar repositories for CATHe
Users that are interested in CATHe are comparing it to the libraries listed below
Sorting:
- ☆23Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆38Updated 4 months ago
- ☆46Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆36Updated 11 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆39Updated 4 years ago
- Evolutionary velocity with protein language models☆95Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Fast and accurate protein structure prediction☆56Updated 11 months ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 6 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- ☆77Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆48Updated last month
- ColabFold protocol☆56Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated this week
- ☆23Updated 2 years ago
- Predict the structure of immune receptor proteins☆58Updated last year
- Python package to manage protein structures and their annotations☆45Updated last year
- Biological prediction models made simple.☆47Updated last month
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 6 months ago