vam-sin / CATHeLinks
Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH superfamilies
☆15Updated 3 years ago
Alternatives and similar repositories for CATHe
Users that are interested in CATHe are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆47Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Updated 5 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆29Updated 11 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Fast and accurate protein structure prediction☆57Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 5 months ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 7 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Biological prediction models made simple.☆48Updated 3 weeks ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 7 months ago
- ☆50Updated 2 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Github for the TOPCONS2☆18Updated 11 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- ☆25Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- ☆40Updated 4 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year