lamoureux-lab / TorchProteinLibraryLinks
PyTorch library of layers acting on protein representations
☆119Updated last year
Alternatives and similar repositories for TorchProteinLibrary
Users that are interested in TorchProteinLibrary are comparing it to the libraries listed below
Sorting:
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆108Updated last year
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆108Updated 4 months ago
- Recurrent Geometric Network in Pytorch☆28Updated 5 years ago
- A PyTorch framework for prediction of tertiary protein structure☆191Updated 4 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆167Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Updated 3 years ago
- ☆36Updated 6 years ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆126Updated 3 years ago
- This repository has been integrated in https://github.com/DeepRank/deeprank2☆146Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆99Updated last year
- Database of Interacting Protein Structures (DIPS)☆103Updated last year
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Updated 5 years ago
- Learning protein structure with a differentiable simulator☆27Updated 6 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆220Updated 4 years ago
- Energy-based models for atomic-resolution protein conformations☆101Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- ☆63Updated 6 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows☆155Updated 2 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆57Updated 3 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆112Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆98Updated 2 years ago