lamoureux-lab / TorchProteinLibrary
PyTorch library of layers acting on protein representations
☆117Updated 7 months ago
Alternatives and similar repositories for TorchProteinLibrary:
Users that are interested in TorchProteinLibrary are comparing it to the libraries listed below
- Reimplementation of the UniRep protein featurization model.☆104Updated 5 months ago
- Database of Interacting Protein Structures (DIPS)☆96Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆78Updated 4 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆55Updated 3 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆98Updated 2 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆160Updated last year
- ☆35Updated 5 years ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆83Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆119Updated 3 years ago
- Attempt at reproduction of AlphaFold2